KEGG   PATHWAY: ypz00030
Entry
ypz00030                    Pathway                                
Name
Pentose phosphate pathway - Yersinia pestis Z176003
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ypz00030  Pentose phosphate pathway
ypz00030

Module
ypz_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ypz00030]
ypz_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ypz00030]
ypz_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ypz00030]
ypz_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ypz00030]
ypz_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ypz00030]
ypz_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ypz00030]
ypz_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ypz00030]
Other DBs
GO: 0006098
Organism
Yersinia pestis Z176003 [GN:ypz]
Gene
YPZ3_3278  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
YPZ3_1758  zwf; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
YPZ3_1041  hypothetical protein [KO:K07404] [EC:3.1.1.31]
YPZ3_1406  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
YPZ3_0134  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
YPZ3_0800  tktA; transketolase [KO:K00615] [EC:2.2.1.1]
YPZ3_2916  C-terminal region of transketolase [KO:K00615] [EC:2.2.1.1]
YPZ3_2917  putative N-terminal region of transketolase [KO:K00615] [EC:2.2.1.1]
YPZ3_0450  talB; transaldolase [KO:K00616] [EC:2.2.1.2]
YPZ3_0809  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
YPZ3_1181  rpiA; putative ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
YPZ3_2952  rpiB; ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
YPZ3_3112  putative deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
YPZ3_0423  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
YPZ3_1211  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
YPZ3_0008  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
YPZ3_3111  carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
YPZ3_0426  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
YPZ3_2368  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
YPZ3_3059  phnN; PhnN protein [KO:K05774] [EC:2.7.4.23]
YPZ3_1806  prsA; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
YPZ3_2237  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
YPZ3_1757  eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
YPZ3_3498  2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
YPZ3_2210  putative gluconokinase [KO:K00851] [EC:2.7.1.12]
YPZ3_2244  idnK; putative thermosensitive gluconokinase [KO:K00851] [EC:2.7.1.12]
YPZ3_2176  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
YPZ3_0804  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
YPZ3_2204  hypothetical protein [KO:K01624] [EC:4.1.2.13]
YPZ3_3243  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
YPZ3_0082  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
YPZ3_0071  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ypz00010  Glycolysis / Gluconeogenesis
ypz00040  Pentose and glucuronate interconversions
ypz00052  Galactose metabolism
ypz00230  Purine metabolism
ypz00240  Pyrimidine metabolism
ypz00340  Histidine metabolism
ypz00630  Glyoxylate and dicarboxylate metabolism
ypz00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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