KEGG   PATHWAY: pcd00020
Entry
pcd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mixta calida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcd00020  Citrate cycle (TCA cycle)
pcd00020

Module
pcd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcd00020]
pcd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcd00020]
pcd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcd00020]
pcd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcd00020]
pcd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcd00020]
Other DBs
GO: 0006099
Organism
Mixta calida [GN:pcd]
Gene
C2E16_06510  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
C2E16_11115  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2E16_04395  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C2E16_08545  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C2E16_06535  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C2E16_06540  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C2E16_04375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2E16_06550  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C2E16_06545  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C2E16_06525  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C2E16_06530  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C2E16_06515  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
C2E16_06520  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C2E16_18580  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
C2E16_18585  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
C2E16_18590  fumarate reductase subunit FrdC [KO:K00246]
C2E16_18595  fumarate reductase subunit FrdD [KO:K00247]
C2E16_10185  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C2E16_02550  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C2E16_08895  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C2E16_01145  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C2E16_01830  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C2E16_04365  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C2E16_04370  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcd00010  Glycolysis / Gluconeogenesis
pcd00053  Ascorbate and aldarate metabolism
pcd00061  Fatty acid biosynthesis
pcd00071  Fatty acid degradation
pcd00190  Oxidative phosphorylation
pcd00220  Arginine biosynthesis
pcd00250  Alanine, aspartate and glutamate metabolism
pcd00280  Valine, leucine and isoleucine degradation
pcd00350  Tyrosine metabolism
pcd00470  D-Amino acid metabolism
pcd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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