KEGG   PATHWAY: pfe03070
Entry
pfe03070                    Pathway                                
Name
Bacterial secretion system - Pseudomonas ogarae F113
Description
Gram-negative bacteria secrete a wide range of proteins whose functions include biogenesis of organelles, such as pilli and flagella, nutrient acquisition, virulence, and efflux of drugs and other toxins. Six distinct secretion systems have been shown to mediate protein export through the inner and outer membranes of Gram-negative bacteria. These pathways are highly conserved throughout the Gram-negative bacterial species. In Gram-positive bacteria, secreted proteins are commonly translocated across the single membrane by the Sec pathway or the two-arginine (Tat) pathway.
Class
Environmental Information Processing; Membrane transport
Pathway map
pfe03070  Bacterial secretion system
pfe03070

Other DBs
GO: 0030253 0015628 0030254 0030255 0046819 0033103 0044098 0043952 0043953
Organism
Pseudomonas ogarae F113 [GN:pfe]
Gene
PSF113_0357  secB; SecB [KO:K03071]
PSF113_0399  tatC; TatC [KO:K03118]
PSF113_0400  tatB; TatB [KO:K03117]
PSF113_0401  tatA; TatA [KO:K03116]
PSF113_0437  xcpP; XcpP [KO:K02452]
PSF113_0438  xcpQ; XcpQ [KO:K02453]
PSF113_0439  xcpR; XcpR [KO:K02454] [EC:7.4.2.8]
PSF113_0440  xcpS; XcpS [KO:K02455]
PSF113_0441  xcpT; XcpT [KO:K02456]
PSF113_0442  xcpU; XcpU [KO:K02457]
PSF113_0443  xcpV; XcpV [KO:K02458]
PSF113_0444  xcpW; XcpW [KO:K02459]
PSF113_0445  xcpX; XcpX [KO:K02460]
PSF113_0446  xcpY; XcpY [KO:K02461]
PSF113_0447  gspM; GspM [KO:K02462]
PSF113_0495  vgrG2b; VgrG2b [KO:K11904]
PSF113_0530  [KO:K12340]
PSF113_0666  vgrG2c; VgrG2c [KO:K11904]
PSF113_1004  yajC; YajC [KO:K03210]
PSF113_1005  secD; SecD [KO:K03072]
PSF113_1006  secF; SecF [KO:K03074]
PSF113_1057  ffh; Ffh [KO:K03106] [EC:3.6.5.4]
PSF113_1781  invA; InvA [KO:K03230]
PSF113_1784  spaO; SpaO [KO:K03225]
PSF113_1797  prgI; PrgI [KO:K03221]
PSF113_1976  hcp2; Hcp2 [KO:K11903]
PSF113_2409  vgrG; VgrG [KO:K11904]
PSF113_2411  clpB; ClpB [KO:K11907]
PSF113_2415  impD; ImpD [KO:K11903]
PSF113_2420  dotU3; DotU3 [KO:K11892]
PSF113_2421  icmF3; IcmF3 [KO:K11891]
PSF113_2736  tolC; TolC [KO:K12340]
PSF113_2885  vgrG1b; VgrG1b [KO:K11904]
PSF113_3144  vgrG2d; VgrG2d [KO:K11904]
PSF113_3690  hxcW; HxcW/XcpW2 [KO:K02459]
PSF113_3691  hxcU; HxcU [KO:K02457]
PSF113_3692  hxcP; HxcP [KO:K02452]
PSF113_3693  hxcV; HxcV/XcpV2 [KO:K02458]
PSF113_3694  hxcT; HxcT/XcpT2 [KO:K02456]
PSF113_3695  hxcX; HxcX/XcpX2 [KO:K02460]
PSF113_3696  hxcY; HxcY [KO:K02461]
PSF113_3697  hxcZ; HxcZ/XcpZ2 [KO:K02462]
PSF113_3698  hxcQ; HxcQ [KO:K02453]
PSF113_3699  hxcR; HxcR/XcpR2 [KO:K02454] [EC:7.4.2.8]
PSF113_3700  hxcS; HxcS/XcpS2 [KO:K02455]
PSF113_3904  vgrG2e; VgrG2e [KO:K11904]
PSF113_4636  secA; SecA [KO:K03070] [EC:7.4.2.8]
PSF113_5276  secY; SecY [KO:K03076]
PSF113_5308  secE; SecE [KO:K03073]
PSF113_5558  ftsY; FtsY [KO:K03110]
PSF113_5589  hrcJ; HrcJ, rscJ [KO:K03222]
PSF113_5591  hrpE; HrpE, rspE [KO:K03223]
PSF113_5594  hrcC; HrcC, rscC [KO:K03219]
PSF113_5599  hrcU; HrcU, rscU [KO:K03229]
PSF113_5600  hrcT; HrcT, rscT [KO:K03228]
PSF113_5601  hrcS; HrcS, rscS [KO:K03227]
PSF113_5602  hrcR; HrcR, rscR [KO:K03226]
PSF113_5603  hrcQ; HrcQ, rscQ [KO:K03225]
PSF113_5605  hrpO; HrpO, rspO [KO:K04056]
PSF113_5606  hrcN; HrcN, rscN [KO:K03224] [EC:7.4.2.8]
PSF113_5608  hrcV; HrcV, rscV [KO:K03230]
PSF113_5609  hrpJ; HrpJ, rspJ [KO:K04058]
PSF113_5650  pilB2; PilB [KO:K02454] [EC:7.4.2.8]
PSF113_5789  ppkA; PpkA [KO:K11912] [EC:2.7.11.1]
PSF113_5790  pppA; PppA [KO:K11915] [EC:3.1.3.16]
PSF113_5792  icmF1; IcmF1 [KO:K11891]
PSF113_5793  impK; ImpK [KO:K11892]
PSF113_5795  vasD; VasD [KO:K11906]
PSF113_5796  impI; ImpI [KO:K11913]
PSF113_5800  impD2; ImpD [KO:K11903]
PSF113_5806  clpB3; ClpB [KO:K11907]
PSF113_5807  vgrG1a; VgrG1a [KO:K11904]
PSF113_5816  stp1; Stp1 [KO:K11915] [EC:3.1.3.16]
PSF113_5817  icmF2; IcmF2 [KO:K11891]
PSF113_5818  impK3; ImpK [KO:K11892]
PSF113_5820  vasD2; VasD [KO:K11906]
PSF113_5823  clpB4; ClpB [KO:K11907]
PSF113_5830  vgrG2a; VgrG2a [KO:K11904]
PSF113_5920  yidC; YidC [KO:K03217]
Compound
C00002  ATP
Reference
PMID:11173102
  Authors
Kim JF.
  Title
Revisiting the chlamydial type III protein secretion system: clues to the origin of type III protein secretion.
  Journal
Trends Genet 17:65-9 (2001)
DOI:10.1016/S0168-9525(00)02175-2
Reference
PMID:11309112
  Authors
Plano GV, Day JB, Ferracci F.
  Title
Type III export: new uses for an old pathway.
  Journal
Mol Microbiol 40:284-93 (2001)
DOI:10.1046/j.1365-2958.2001.02354.x
Reference
PMID:11413015
  Authors
Gauthier A, Finlay BB.
  Title
Bacterial pathogenesis: the answer to virulence is in the pore.
  Journal
Curr Biol 11:R264-7 (2001)
DOI:10.1016/S0960-9822(01)00134-8
Reference
PMID:10047550
  Authors
Burns DL.
  Title
Biochemistry of type IV secretion.
  Journal
Curr Opin Microbiol 2:25-9 (1999)
DOI:10.1016/S1369-5274(99)80004-6
Reference
PMID:10920394
  Authors
Christie PJ, Vogel JP.
  Title
Bacterial type IV secretion: conjugation systems adapted to deliver effector molecules to host cells.
  Journal
Trends Microbiol 8:354-60 (2000)
DOI:10.1016/S0966-842X(00)01792-3
Reference
PMID:11309113
  Authors
Christie PJ.
  Title
Type IV secretion: intercellular transfer of macromolecules by systems ancestrally related to conjugation machines.
  Journal
Mol Microbiol 40:294-305 (2001)
DOI:10.1046/j.1365-2958.2001.02302.x
Reference
PMID:10481178
  Authors
Nunn D.
  Title
Bacterial type II protein export and pilus biogenesis: more than just homologies?
  Journal
Trends Cell Biol 9:402-8 (1999)
DOI:10.1016/S0962-8924(99)01634-7
Reference
PMID:11309111
  Authors
Sandkvist M.
  Title
Biology of type II secretion.
  Journal
Mol Microbiol 40:271-83 (2001)
DOI:10.1046/j.1365-2958.2001.02403.x
Reference
PMID:11349009
  Authors
Sandkvist M.
  Title
Type II secretion and pathogenesis.
  Journal
Infect Immun 69:3523-35 (2001)
DOI:10.1128/IAI.69.6.3523-3535.2001
Reference
PMID:15546664
  Authors
Delepelaire P
  Title
Type I secretion in gram-negative bacteria.
  Journal
Biochim Biophys Acta 1694:149-61 (2004)
DOI:10.1016/j.bbamcr.2004.05.001
Reference
PMID:18406342
  Authors
Hazes B, Frost L
  Title
Towards a systems biology approach to study type II/IV secretion systems.
  Journal
Biochim Biophys Acta 1778:1839-50 (2008)
DOI:10.1016/j.bbamem.2008.03.011
Reference
PMID:16448494
  Authors
Johnson TL, Abendroth J, Hol WG, Sandkvist M
  Title
Type II secretion: from structure to function.
  Journal
FEMS Microbiol Lett 255:175-86 (2006)
DOI:10.1111/j.1574-6968.2006.00102.x
Reference
PMID:15546665
  Authors
Filloux A
  Title
The underlying mechanisms of type II protein secretion.
  Journal
Biochim Biophys Acta 1694:163-79 (2004)
DOI:10.1016/j.bbamcr.2004.05.003
Reference
PMID:19396170
  Authors
Spreter T, Yip CK, Sanowar S, Andre I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC
  Title
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
  Journal
Nat Struct Mol Biol 16:468-76 (2009)
DOI:10.1038/nsmb.1603
Reference
PMID:15590783
  Authors
Ghosh P
  Title
Process of protein transport by the type III secretion system.
  Journal
Microbiol Mol Biol Rev 68:771-95 (2004)
DOI:10.1128/MMBR.68.4.771-795.2004
Reference
PMID:12360191
  Authors
Cornelis GR
  Title
The Yersinia Ysc-Yop 'type III' weaponry.
  Journal
Nat Rev Mol Cell Biol 3:742-52 (2002)
DOI:10.1038/nrm932
Reference
PMID:17215876
  Authors
Baron C
  Title
VirB8: a conserved type IV secretion system assembly factor and drug target.
  Journal
Biochem Cell Biol 84:890-9 (2006)
DOI:10.1139/o06-148
Reference
PMID:17943123
  Authors
Kwok T, Zabler D, Urman S, Rohde M, Hartig R, Wessler S, Misselwitz R, Berger J, Sewald N, Konig W, Backert S
  Title
Helicobacter exploits integrin for type IV secretion and kinase activation.
  Journal
Nature 449:862-6 (2007)
DOI:10.1038/nature06187
Reference
PMID:16092524
  Authors
Christie PJ, Cascales E
  Title
Structural and dynamic properties of bacterial type IV secretion systems (review).
  Journal
Mol Membr Biol 22:51-61 (2005)
DOI:10.1080/09687860500063316
Reference
PMID:15546668
  Authors
Christie PJ
  Title
Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems.
  Journal
Biochim Biophys Acta 1694:219-34 (2004)
DOI:10.1016/j.bbamcr.2004.02.013
Reference
PMID:15590781
  Authors
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D
  Title
Type V protein secretion pathway: the autotransporter story.
  Journal
Microbiol Mol Biol Rev 68:692-744 (2004)
DOI:10.1128/MMBR.68.4.692-744.2004
Reference
PMID:9778731
  Authors
Henderson IR, Navarro-Garcia F, Nataro JP
  Title
The great escape: structure and function of the autotransporter proteins.
  Journal
Trends Microbiol 6:370-8 (1998)
DOI:10.1016/S0966-842X(98)01318-3
Reference
PMID:18524912
  Authors
Filloux A, Hachani A, Bleves S
  Title
The bacterial type VI secretion machine: yet another player for protein transport across membranes.
  Journal
Microbiology 154:1570-83 (2008)
DOI:10.1099/mic.0.2008/016840-0
Reference
PMID:19251641
  Authors
Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ
  Title
Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin.
  Journal
Proc Natl Acad Sci U S A 106:4154-9 (2009)
DOI:10.1073/pnas.0813360106
Reference
PMID:17603507
  Authors
Kulasekara HD, Miller SI
  Title
Threonine phosphorylation times bacterial secretion.
  Journal
Nat Cell Biol 9:734-6 (2007)
DOI:10.1038/ncb0707-734
Reference
PMID:18078384
  Authors
Driessen AJ, Nouwen N
  Title
Protein translocation across the bacterial cytoplasmic membrane.
  Journal
Annu Rev Biochem 77:643-67 (2008)
DOI:10.1146/annurev.biochem.77.061606.160747
Reference
PMID:14641032
  Authors
Pool MR
  Title
Getting to the membrane: how is co-translational protein targeting to the endoplasmic reticulum regulated?
  Journal
Biochem Soc Trans 31:1232-7 (2003)
DOI:10.1042/bst0311232
Reference
PMID:19299134
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
PMID:15063851
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03070   

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