KEGG   PATHWAY: pfg00020
Entry
pfg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pandoraea faecigallinarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfg00020  Citrate cycle (TCA cycle)
pfg00020

Module
pfg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfg00020]
pfg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfg00020]
pfg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfg00020]
pfg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfg00020]
pfg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfg00020]
Other DBs
GO: 0006099
Organism
Pandoraea faecigallinarum [GN:pfg]
Gene
AB870_19995  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AB870_17985  citrate synthase [KO:K01647] [EC:2.3.3.1]
AB870_22340  excisionase [KO:K01647] [EC:2.3.3.1]
AB870_19950  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AB870_02165  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AB870_06365  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AB870_03685  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
AB870_01435  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AB870_01430  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AB870_20515  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB870_01425  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AB870_07790  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AB870_07795  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AB870_02520  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AB870_19980  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AB870_19985  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AB870_19970  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AB870_19975  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AB870_15900  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AB870_11275  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AB870_19960  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AB870_22720  hypothetical protein [KO:K00116] [EC:1.1.5.4]
AB870_12075  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AB870_20500  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AB870_07560  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AB870_20505  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfg00010  Glycolysis / Gluconeogenesis
pfg00053  Ascorbate and aldarate metabolism
pfg00061  Fatty acid biosynthesis
pfg00071  Fatty acid degradation
pfg00190  Oxidative phosphorylation
pfg00220  Arginine biosynthesis
pfg00250  Alanine, aspartate and glutamate metabolism
pfg00280  Valine, leucine and isoleucine degradation
pfg00350  Tyrosine metabolism
pfg00470  D-Amino acid metabolism
pfg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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