KEGG   PATHWAY: pfl00030
Entry
pfl00030                    Pathway                                
Name
Pentose phosphate pathway - Pseudomonas protegens Pf-5
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfl00030  Pentose phosphate pathway
pfl00030

Module
pfl_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pfl00030]
pfl_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:pfl00030]
pfl_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:pfl00030]
pfl_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:pfl00030]
pfl_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:pfl00030]
Other DBs
GO: 0006098
Organism
Pseudomonas protegens Pf-5 [GN:pfl]
Gene
PFL_0053  [KO:K06152] [EC:1.1.99.3]
PFL_0054  [KO:K06151] [EC:1.1.99.3]
PFL_0393  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
PFL_0945  trxB_1; thioredoxin-disulfide reductase [KO:K22345] [EC:4.3.1.9]
PFL_1001  ghrB2; glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
PFL_1698  ttuD; putative glycerate dehydrogenase [KO:K11529] [EC:2.7.1.165]
PFL_1974  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
PFL_2105  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
PFL_2717  ghrB1; glyoxylate/hydroxypyruvate reductase B [KO:K00032] [EC:1.1.1.43]
PFL_2719  kdgK_1; 2-dehydro-3-deoxygluconokinase [KO:K11441] [EC:2.7.1.13]
PFL_3143  zwf_1; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PFL_3144  gnd; phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PFL_3231  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
PFL_3276  [KO:K07404] [EC:3.1.1.31]
PFL_3580  kdgK_2; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
PFL_3718  [KO:K00131] [EC:1.2.1.9]
PFL_4100  gdh; glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
PFL_4580  gntK; gluconokinase GntK [KO:K00851] [EC:2.7.1.12]
PFL_4608  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PFL_4609  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
PFL_4610  zwf_2; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PFL_4622  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
PFL_4916  gcd; quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
PFL_5165  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
PFL_5280  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PFL_5631  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PFL_5781  fba; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
PFL_5786  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
PFL_5906  rpiA; ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
PFL_6054  algC; phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pfl00010  Glycolysis / Gluconeogenesis
pfl00040  Pentose and glucuronate interconversions
pfl00052  Galactose metabolism
pfl00230  Purine metabolism
pfl00240  Pyrimidine metabolism
pfl00340  Histidine metabolism
pfl00630  Glyoxylate and dicarboxylate metabolism
pfl00750  Vitamin B6 metabolism
KO pathway
ko00030   

DBGET integrated database retrieval system