KEGG   PATHWAY: phi03030
Entry
phi03030                    Pathway                                
Name
DNA replication - Pseudopodoces humilis (Tibetan ground-tit)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
phi03030  DNA replication
phi03030

Organism
Pseudopodoces humilis (Tibetan ground-tit) [GN:phi]
Gene
102099101  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
102099645  POLE2; DNA polymerase epsilon subunit 2 isoform X3 [KO:K02325] [EC:2.7.7.7]
102099872  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
102099954  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
102101136  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
102101288  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
102101786  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
102102353  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
102102468  PCNA; proliferating cell nuclear antigen [KO:K04802]
102103592  RPA3; replication protein A 14 kDa subunit [KO:K10740]
102104171  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
102104792  POLA2; DNA polymerase alpha subunit B [KO:K02321]
102105649  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
102106593  MCM7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
102106846  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
102107278  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
102107300  RFC5; replication factor C subunit 5 isoform X2 [KO:K10756]
102107501  RPA2; replication protein A 32 kDa subunit [KO:K10739]
102107701  PRIM2; DNA primase large subunit [KO:K02685]
102108308  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
102109236  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
102109245  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
102109954  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
102110275  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
102110901  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
102111312  RFC3; replication factor C subunit 3 [KO:K10756]
102113019  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
102113459  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
102113783  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
102114555  RFC2; replication factor C subunit 2 [KO:K10755]
102114706  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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