KEGG   PATHWAY: phj00020
Entry
phj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudalkalibacillus hwajinpoensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
phj00020  Citrate cycle (TCA cycle)
phj00020

Module
phj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:phj00020]
phj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:phj00020]
phj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:phj00020]
Other DBs
GO: 0006099
Organism
Pseudalkalibacillus hwajinpoensis [GN:phj]
Gene
LC071_15955  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LC071_05550  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
LC071_00075  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LC071_15575  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LC071_00925  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LC071_03515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LC071_15245  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
LC071_21150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LC071_21940  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LC071_21935  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LC071_05260  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LC071_05255  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LC071_05265  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
LC071_11070  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LC071_05540  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LC071_11630  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LC071_21285  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LC071_06145  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LC071_15230  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LC071_21135  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LC071_15235  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LC071_21140  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LC071_15240  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
LC071_21145  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
phj00010  Glycolysis / Gluconeogenesis
phj00053  Ascorbate and aldarate metabolism
phj00061  Fatty acid biosynthesis
phj00071  Fatty acid degradation
phj00190  Oxidative phosphorylation
phj00220  Arginine biosynthesis
phj00250  Alanine, aspartate and glutamate metabolism
phj00280  Valine, leucine and isoleucine degradation
phj00350  Tyrosine metabolism
phj00470  D-Amino acid metabolism
phj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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