KEGG   PATHWAY: pjd00040
Entry
pjd00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Paenibacillus sp. JDR-2
Class
Metabolism; Carbohydrate metabolism
Pathway map
pjd00040  Pentose and glucuronate interconversions
pjd00040

Module
pjd_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pjd00040]
Organism
Paenibacillus sp. JDR-2 [GN:pjd]
Gene
Pjdr2_3527  4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [KO:K01815] [EC:5.3.1.17]
Pjdr2_3529  2-deoxy-D-gluconate 3-dehydrogenase [KO:K00065] [EC:1.1.1.127]
Pjdr2_2923  Glucuronate isomerase [KO:K01812] [EC:5.3.1.12]
Pjdr2_2924  Mannitol dehydrogenase domain protein [KO:K00041] [EC:1.1.1.58]
Pjdr2_2925  Altronate dehydratase [KO:K01685] [EC:4.2.1.7]
Pjdr2_4217  Mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
Pjdr2_0333  mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
Pjdr2_1176  Mandelate racemase/muconate lactonizing protein [KO:K08323] [EC:4.2.1.8]
Pjdr2_2995  Beta-galactosidase [KO:K01195] [EC:3.2.1.31]
Pjdr2_0365  nucleotide sugar dehydrogenase [KO:K00012] [EC:1.1.1.22]
Pjdr2_0414  nucleotide sugar dehydrogenase [KO:K00012] [EC:1.1.1.22]
Pjdr2_5490  nucleotide sugar dehydrogenase [KO:K00012] [EC:1.1.1.22]
Pjdr2_5448  nucleotide sugar dehydrogenase [KO:K00012] [EC:1.1.1.22]
Pjdr2_1220  UTP-glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
Pjdr2_0364  UTP-glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
Pjdr2_0787  UTP-glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
Pjdr2_0401  UTP-glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
Pjdr2_5565  Xylose isomerase domain protein TIM barrel [KO:K03079] [EC:5.1.3.22]
Pjdr2_4207  L-ribulose-5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
Pjdr2_3748  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Pjdr2_2502  L-arabinose isomerase [KO:K01804] [EC:5.3.1.4]
Pjdr2_1888  carbohydrate kinase FGGY [KO:K00854] [EC:2.7.1.17]
Pjdr2_6161  xylulokinase [KO:K00854] [EC:2.7.1.17]
Pjdr2_5158  xylulokinase [KO:K00854] [EC:2.7.1.17]
Pjdr2_1830  xylulokinase [KO:K00854] [EC:2.7.1.17]
Pjdr2_5159  xylose isomerase [KO:K01805] [EC:5.3.1.5]
Pjdr2_3940  FAD linked oxidase domain protein [KO:K00594] [EC:1.1.3.41]
Pjdr2_3538  carbohydrate kinase FGGY [KO:K00848] [EC:2.7.1.5]
Pjdr2_1348  carbohydrate kinase FGGY [KO:K00848] [EC:2.7.1.5]
Pjdr2_0653  oxidoreductase domain protein [KO:K14273] [EC:1.1.1.179]
Pjdr2_1346  L-fucose isomerase [KO:K01818] [EC:5.3.1.25 5.3.1.3]
Pjdr2_1347  class II aldolase/adducin family protein [KO:K01628] [EC:4.1.2.17]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
pjd00010  Glycolysis / Gluconeogenesis
pjd00020  Citrate cycle (TCA cycle)
pjd00030  Pentose phosphate pathway
pjd00052  Galactose metabolism
pjd00053  Ascorbate and aldarate metabolism
pjd00500  Starch and sucrose metabolism
pjd00520  Amino sugar and nucleotide sugar metabolism
pjd00561  Glycerolipid metabolism
pjd00562  Inositol phosphate metabolism
pjd00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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