KEGG   PATHWAY: pjd00030
Entry
pjd00030                    Pathway                                
Name
Pentose phosphate pathway - Paenibacillus sp. JDR-2
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pjd00030  Pentose phosphate pathway
pjd00030

Module
pjd_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pjd00030]
pjd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pjd00030]
pjd_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pjd00030]
pjd_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pjd00030]
pjd_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:pjd00030]
pjd_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:pjd00030]
pjd_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pjd00030]
Other DBs
GO: 0006098
Organism
Paenibacillus sp. JDR-2 [GN:pjd]
Gene
Pjdr2_1257  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Pjdr2_1111  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pjdr2_2695  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pjdr2_5187  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Pjdr2_0347  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Pjdr2_3810  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pjdr2_3748  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Pjdr2_1254  transketolase [KO:K00615] [EC:2.2.1.1]
Pjdr2_2696  transketolase [KO:K00615] [EC:2.2.1.1]
Pjdr2_1218  transaldolase [KO:K00616] [EC:2.2.1.2]
Pjdr2_2697  transaldolase [KO:K00616] [EC:2.2.1.2]
Pjdr2_2682  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
Pjdr2_5836  sugar-phosphate isomerase, RpiB/LacA/LacB family [KO:K01808] [EC:5.3.1.6]
Pjdr2_1185  3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
Pjdr2_1184  6-phospho 3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
Pjdr2_0440  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Pjdr2_3987  ribokinase [KO:K00852] [EC:2.7.1.15]
Pjdr2_0328  ribokinase [KO:K00852] [EC:2.7.1.15]
Pjdr2_2334  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
Pjdr2_5787  Glucose-1,6-bisphosphate synthase [KO:K01835] [EC:5.4.2.2]
Pjdr2_0167  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Pjdr2_2018  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Pjdr2_5139  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pjdr2_0764  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pjdr2_4221  short-chain dehydrogenase/reductase SDR [KO:K00034] [EC:1.1.1.47]
Pjdr2_4220  short-chain dehydrogenase/reductase SDR [KO:K00034] [EC:1.1.1.47]
Pjdr2_0781  short-chain dehydrogenase/reductase SDR [KO:K00034] [EC:1.1.1.47]
Pjdr2_2942  Gluconate 2-dehydrogenase (acceptor) [KO:K06151] [EC:1.1.99.3]
Pjdr2_2941  conserved hypothetical protein [KO:K06152] [EC:1.1.99.3]
Pjdr2_1505  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Pjdr2_3593  gluconate kinase [KO:K25031] [EC:2.7.1.12]
Pjdr2_1792  carbohydrate kinase FGGY [KO:K25031] [EC:2.7.1.12]
Pjdr2_0942  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Pjdr2_4468  PfkB domain protein [KO:K00874] [EC:2.7.1.45]
Pjdr2_6054  fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
Pjdr2_1216  fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
Pjdr2_3282  fructose-16-bisphosphatase [KO:K04041] [EC:3.1.3.11]
Pjdr2_2123  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pjd00010  Glycolysis / Gluconeogenesis
pjd00040  Pentose and glucuronate interconversions
pjd00052  Galactose metabolism
pjd00230  Purine metabolism
pjd00240  Pyrimidine metabolism
pjd00340  Histidine metabolism
pjd00630  Glyoxylate and dicarboxylate metabolism
pjd00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system