KEGG   PATHWAY: plep00030
Entry
plep00030                   Pathway                                
Name
Pentose phosphate pathway - Plectropomus leopardus (leopard coralgrouper)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plep00030  Pentose phosphate pathway
plep00030

Module
plep_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:plep00030]
plep_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:plep00030]
plep_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:plep00030]
plep_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:plep00030]
Other DBs
GO: 0006098
Organism
Plectropomus leopardus (leopard coralgrouper) [GN:plep]
Gene
121966093  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
121942891  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
121946659  glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
121946730  glucose-6-phosphate 1-dehydrogenase-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
121956542  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
121949736  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
121946511  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
121949245  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
121946898  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
121947100  transketolase-like [KO:K00615] [EC:2.2.1.1]
121951342  transketolase-like [KO:K00615] [EC:2.2.1.1]
121946057  taldo1; LOW QUALITY PROTEIN: transaldolase [KO:K00616] [EC:2.2.1.2]
121966580  ribose-5-phosphate isomerase-like [KO:K01807] [EC:5.3.1.6]
121953737  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
121938497  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
121961407  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
121953372  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
121941306  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
121951630  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
121941965  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
121948320  prps1b; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
121962744  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
121962960  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
121943903  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
121958055  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
121952339  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
121958476  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
121943106  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
121948511  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
121956416  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
121959870  fbp1b; fructose-1,6-bisphosphatase 1b isoform X1 [KO:K03841] [EC:3.1.3.11]
121944376  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
121944634  fbp1a; fructose-1,6-bisphosphatase 1a [KO:K03841] [EC:3.1.3.11]
121946726  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
121948755  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
121960841  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
121955665  pfkmb; LOW QUALITY PROTEIN: phosphofructokinase, muscle b [KO:K00850] [EC:2.7.1.11]
121951200  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
plep00010  Glycolysis / Gluconeogenesis
plep00040  Pentose and glucuronate interconversions
plep00052  Galactose metabolism
plep00230  Purine metabolism
plep00240  Pyrimidine metabolism
plep00340  Histidine metabolism
plep00630  Glyoxylate and dicarboxylate metabolism
plep00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system