KEGG   PATHWAY: plg00030
Entry
plg00030                    Pathway                                
Name
Pentose phosphate pathway - Paucimonas lemoignei
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plg00030  Pentose phosphate pathway
plg00030

Module
plg_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:plg00030]
plg_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:plg00030]
plg_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:plg00030]
plg_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:plg00030]
Other DBs
GO: 0006098
Organism
Paucimonas lemoignei [GN:plg]
Gene
NCTC10937_04501  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NCTC10937_02556  zwf_2; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NCTC10937_01173  zwf_1; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
NCTC10937_01174  pgl_1; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
NCTC10937_02790  pgl_2; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
NCTC10937_03059  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
NCTC10937_01784  pggL; protein PggL [KO:K07404] [EC:3.1.1.31]
NCTC10937_02555  yqjI_2; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
NCTC10937_04924  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
NCTC10937_05211  tkt_1; transketolase [KO:K00615] [EC:2.2.1.1]
NCTC10937_00403  tktA; transketolase [KO:K00615] [EC:2.2.1.1]
NCTC10937_03219  tktB; transketolase, N-terminal domain-containing protein [KO:K00615] [EC:2.2.1.1]
NCTC10937_03220  dxs_1; transketolase, C-terminal domain-containing protein [KO:K00615] [EC:2.2.1.1]
NCTC10937_01976  tal; transaldolase B [KO:K00616] [EC:2.2.1.2]
NCTC10937_00481  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
NCTC10937_04486  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
NCTC10937_02110  rbsK; carbohydrate kinase PfkB [KO:K00852] [EC:2.7.1.15]
NCTC10937_02652  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
NCTC10937_00185  algC; phosphomannomutase/phosphoglucomutase AlgC [KO:K15778] [EC:5.4.2.8 5.4.2.2]
NCTC10937_02350  phnN; guanylate kinase/L-type calcium channel region [KO:K05774] [EC:2.7.4.23]
NCTC10937_01160  ilvD_1; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
NCTC10937_01175  eda; keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NCTC10937_02969  gapN; NAD-dependent aldehyde dehydrogenase [KO:K00131] [EC:1.2.1.9]
NCTC10937_02309  Short-chain dehydrogenase/reductase SDR [KO:K00034] [EC:1.1.1.47]
NCTC10937_01132  gcd; quinoprotein [KO:K00117] [EC:1.1.5.2]
NCTC10937_03174  SMP-30/gluconolaconase/LRE domain-containing protein [KO:K01053] [EC:3.1.1.17]
NCTC10937_04433  gluconate 2-dehydrogenase [KO:K06151] [EC:1.1.99.3]
NCTC10937_02331  gluconate 2-dehydrogenase [KO:K06151] [EC:1.1.99.3]
NCTC10937_04432  Gluconate 2-dehydrogenase acceptor subunit [KO:K06152] [EC:1.1.99.3]
NCTC10937_02332  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
NCTC10937_04307  ghrB_2; 2-hydroxyacid dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
NCTC10937_02659  ydjH_1; putative sugar kinase [KO:K11441] [EC:2.7.1.13]
NCTC10937_03594  gntK; carbohydrate kinase, thermoresistant glucokinase [KO:K00851] [EC:2.7.1.12]
NCTC10937_02780  ydjH_2; carbohydrate kinase PfkB [KO:K00874] [EC:2.7.1.45]
NCTC10937_04342  trxB; thioredoxin reductase [KO:K22345] [EC:4.3.1.9]
NCTC10937_00409  fda; fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
NCTC10937_00512  fbp_1; fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
plg00010  Glycolysis / Gluconeogenesis
plg00040  Pentose and glucuronate interconversions
plg00052  Galactose metabolism
plg00230  Purine metabolism
plg00240  Pyrimidine metabolism
plg00340  Histidine metabolism
plg00630  Glyoxylate and dicarboxylate metabolism
plg00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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