KEGG   PATHWAY: pmul00020
Entry
pmul00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pasteurella multocida ATCC 43137
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmul00020  Citrate cycle (TCA cycle)
pmul00020

Module
pmul_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmul00020]
pmul_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmul00020]
pmul_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmul00020]
pmul_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmul00020]
pmul_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmul00020]
Other DBs
GO: 0006099
Organism
Pasteurella multocida ATCC 43137 [GN:pmul]
Gene
DR93_1784  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DR93_1862  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DR93_455  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DR93_1783  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DR93_1782  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DR93_1734  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DR93_1779  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DR93_1780  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DR93_1865  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DR93_1866  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
DR93_1867  frdC; fumarate reductase subunit C [KO:K00246]
DR93_1868  frdD; fumarate reductase subunit D [KO:K00247]
DR93_1663  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DR93_1327  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
DR93_386  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DR93_1736  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DR93_1735  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmul00010  Glycolysis / Gluconeogenesis
pmul00053  Ascorbate and aldarate metabolism
pmul00061  Fatty acid biosynthesis
pmul00190  Oxidative phosphorylation
pmul00220  Arginine biosynthesis
pmul00250  Alanine, aspartate and glutamate metabolism
pmul00280  Valine, leucine and isoleucine degradation
pmul00350  Tyrosine metabolism
pmul00470  D-Amino acid metabolism
pmul00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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