KEGG   PATHWAY: pory00010
Entry
pory00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Pseudomonas oryziphila
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pory00010  Glycolysis / Gluconeogenesis
pory00010

Module
pory_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pory00010]
pory_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pory00010]
pory_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pory00010]
Other DBs
GO: 0006096 0006094
Organism
Pseudomonas oryziphila [GN:pory]
Gene
EJA05_22510  glucokinase [KO:K00845] [EC:2.7.1.2]
EJA05_03970  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
EJA05_26225  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
EJA05_25800  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
EJA05_03880  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
EJA05_22520  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
EJA05_09150  glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
EJA05_25815  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
EJA05_26300  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
EJA05_21945  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
EJA05_23340  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
EJA05_08800  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
EJA05_19880  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
EJA05_01850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EJA05_04920  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EJA05_25055  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
EJA05_01845  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
EJA05_19390  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJA05_20250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJA05_27945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJA05_21925  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
EJA05_14525  L-threonine dehydrogenase [KO:K13954] [EC:1.1.1.1]
EJA05_16215  NAD(P)-dependent alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
EJA05_15305  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
EJA05_03215  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
EJA05_19090  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EJA05_20405  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EJA05_03960  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EJA05_15320  CoA-binding protein [KO:K24012] [EC:6.2.1.13]
EJA05_06475  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
EJA05_15020  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
EJA05_27510  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
EJA05_27735  D-hexose-6-phosphate mutarotase [KO:K01792] [EC:5.1.3.15]
EJA05_12675  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
EJA05_01330  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pory00020  Citrate cycle (TCA cycle)
pory00030  Pentose phosphate pathway
pory00500  Starch and sucrose metabolism
pory00620  Pyruvate metabolism
pory00640  Propanoate metabolism
pory00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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