KEGG   PATHWAY: ppel00020
Entry
ppel00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudonocardia petroleophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppel00020  Citrate cycle (TCA cycle)
ppel00020

Module
ppel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppel00020]
ppel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppel00020]
ppel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppel00020]
ppel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppel00020]
ppel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppel00020]
Other DBs
GO: 0006099
Organism
Pseudonocardia petroleophila [GN:ppel]
Gene
H6H00_29535  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
H6H00_05220  citrate synthase [KO:K01647] [EC:2.3.3.1]
H6H00_05250  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
H6H00_19130  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
H6H00_23220  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H6H00_12725  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H6H00_13600  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
H6H00_14460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H6H00_17645  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H6H00_11730  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H6H00_11725  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H6H00_12610  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H6H00_12605  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H6H00_16895  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H6H00_16910  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H6H00_16900  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H6H00_16915  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H6H00_16890  succinate dehydrogenase cytochrome b subunit [KO:K00241]
H6H00_29675  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
H6H00_03905  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H6H00_27110  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H6H00_31330  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
H6H00_09755  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
H6H00_30035  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
H6H00_17155  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H6H00_14445  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
H6H00_14450  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
H6H00_17640  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppel00010  Glycolysis / Gluconeogenesis
ppel00053  Ascorbate and aldarate metabolism
ppel00061  Fatty acid biosynthesis
ppel00071  Fatty acid degradation
ppel00190  Oxidative phosphorylation
ppel00220  Arginine biosynthesis
ppel00250  Alanine, aspartate and glutamate metabolism
ppel00280  Valine, leucine and isoleucine degradation
ppel00350  Tyrosine metabolism
ppel00470  D-Amino acid metabolism
ppel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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