KEGG   PATHWAY: ppel00630
Entry
ppel00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudonocardia petroleophila
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppel00630  Glyoxylate and dicarboxylate metabolism
ppel00630

Module
ppel_M00621  Glycine cleavage system [PATH:ppel00630]
ppel_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ppel00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudonocardia petroleophila [GN:ppel]
Gene
H6H00_29690  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
H6H00_06285  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
H6H00_17445  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
H6H00_19205  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
H6H00_26985  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
H6H00_31425  malate synthase G [KO:K01638] [EC:2.3.3.9]
H6H00_27110  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H6H00_29535  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
H6H00_05220  citrate synthase [KO:K01647] [EC:2.3.3.1]
H6H00_05250  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
H6H00_19130  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
H6H00_23220  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H6H00_00315  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_00855  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
H6H00_04085  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_05040  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_07405  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
H6H00_08905  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_14130  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_19230  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_20430  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
H6H00_19575  thiolase family protein [KO:K00626] [EC:2.3.1.9]
H6H00_02095  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
H6H00_14125  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
H6H00_13985  protein meaA [KO:K14447] [EC:5.4.99.63]
H6H00_18070  ATP-grasp domain-containing protein [KO:K01965] [EC:6.4.1.3]
H6H00_12990  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
H6H00_13050  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
H6H00_13045  acyl-CoA carboxylase subunit epsilon [KO:K27095]
H6H00_24390  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
H6H00_24395  methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
H6H00_31485  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
H6H00_00280  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
H6H00_00700  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
H6H00_24610  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
H6H00_31490  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
H6H00_31495  4Fe-4S dicluster domain-containing protein [KO:K11473] [EC:1.1.99.14]
H6H00_24615  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
H6H00_06570  catalase [KO:K03781] [EC:1.11.1.6]
H6H00_00805  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
H6H00_27935  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
H6H00_30780  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
H6H00_04400  glutamine synthetase III [KO:K01915] [EC:6.3.1.2]
H6H00_13905  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
H6H00_24015  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
H6H00_17665  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
H6H00_14460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H6H00_17645  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H6H00_24040  gcvH; glycine cleavage system protein GcvH [KO:K02437]
H6H00_24875  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
H6H00_24885  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
H6H00_24880  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
H6H00_17700  glycerate kinase [KO:K00865] [EC:2.7.1.165]
H6H00_24870  glycerate kinase [KO:K00865] [EC:2.7.1.165]
H6H00_13600  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
H6H00_01440  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
H6H00_01435  4Fe-4S dicluster domain-containing protein [KO:K00124]
H6H00_27825  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
H6H00_05350  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
H6H00_29890  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
H6H00_26195  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppel00010  Glycolysis / Gluconeogenesis
ppel00020  Citrate cycle (TCA cycle)
ppel00030  Pentose phosphate pathway
ppel00053  Ascorbate and aldarate metabolism
ppel00071  Fatty acid degradation
ppel00230  Purine metabolism
ppel00250  Alanine, aspartate and glutamate metabolism
ppel00260  Glycine, serine and threonine metabolism
ppel00620  Pyruvate metabolism
ppel00710  Carbon fixation by Calvin cycle
ppel00750  Vitamin B6 metabolism
ppel00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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