KEGG   PATHWAY: ppii00020
Entry
ppii00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas piscis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppii00020  Citrate cycle (TCA cycle)
ppii00020

Module
ppii_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppii00020]
ppii_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppii00020]
ppii_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppii00020]
ppii_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppii00020]
ppii_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppii00020]
Other DBs
GO: 0006099
Organism
Pseudomonas piscis [GN:ppii]
Gene
QL104_08935  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QL104_10180  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QL104_17605  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QL104_20410  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QL104_20415  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QL104_08960  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QL104_08965  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QL104_08970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QL104_13310  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QL104_01395  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QL104_08980  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QL104_08975  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QL104_00600  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QL104_08950  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QL104_08955  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QL104_08940  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QL104_08945  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QL104_24530  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QL104_04585  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QL104_22455  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QL104_12765  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QL104_26180  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QL104_31180  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
QL104_31175  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
QL104_01470  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QL104_25515  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QL104_02540  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QL104_11465  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
QL104_02535  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppii00010  Glycolysis / Gluconeogenesis
ppii00053  Ascorbate and aldarate metabolism
ppii00061  Fatty acid biosynthesis
ppii00071  Fatty acid degradation
ppii00190  Oxidative phosphorylation
ppii00220  Arginine biosynthesis
ppii00250  Alanine, aspartate and glutamate metabolism
ppii00280  Valine, leucine and isoleucine degradation
ppii00350  Tyrosine metabolism
ppii00470  D-Amino acid metabolism
ppii00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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