PATHWAY: ppii00470
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Entry
ppii00470 Pathway
Name
D-Amino acid metabolism - Pseudomonas piscis
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
ppii00470
D-Amino acid metabolism
Ortholog table
Module
ppii_M00947
D-Arginine racemization, D-arginine => L-arginine [PATH:
ppii00470
]
ppii_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
ppii00470
]
Other DBs
GO:
0046416
Organism
Pseudomonas piscis [GN:
ppii
]
Gene
QL104_30545
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
QL104_25880
D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
QL104_26480
ddlA; D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
QL104_16905
aspartate/glutamate racemase family protein [KO:
K25316
] [EC:
5.1.1.10
]
QL104_16605
glsB; glutaminase B [KO:
K01425
] [EC:
3.5.1.2
]
QL104_11025
asparaginase [KO:
K05597
] [EC:
3.5.1.38
]
QL104_26290
murI; glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
QL104_25900
murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
QL104_19000
amino acid deaminase [KO:
K01753
] [EC:
4.3.1.18
]
QL104_01310
D-cysteine desulfhydrase [KO:
K05396
] [EC:
4.4.1.15
]
QL104_13370
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
QL104_21035
diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
QL104_30435
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
QL104_12245
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
QL104_30430
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
QL104_03970
FAD-dependent oxidoreductase [KO:
K19746
] [EC:
1.4.99.6
]
QL104_05230
FAD-binding oxidoreductase [KO:
K19746
] [EC:
1.4.99.6
]
QL104_05235
ornithine cyclodeaminase family protein [KO:
K19744
] [EC:
1.4.1.25
]
QL104_12515
proline racemase family protein [KO:
K01777
] [EC:
5.1.1.4
]
QL104_07215
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
QL104_07200
FAD/NAD(P)-binding oxidoreductase [KO:
K22549
] [EC:1.5.99.-]
QL104_07210
FAD-dependent oxidoreductase [KO:
K21061
] [EC:1.5.99.-]
QL104_07205
(2Fe-2S)-binding protein [KO:
K22550
]
QL104_07780
dihydrodipicolinate synthase family protein [KO:
K21062
] [EC:
3.5.4.22
]
QL104_07775
aldehyde dehydrogenase (NADP(+)) [KO:
K13877
] [EC:
1.2.1.26
]
QL104_08005
aldehyde dehydrogenase (NADP(+)) [KO:
K13877
] [EC:
1.2.1.26
]
QL104_29375
D-amino acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
QL104_30555
dadA; D-amino acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
ppii00010
Glycolysis / Gluconeogenesis
ppii00020
Citrate cycle (TCA cycle)
ppii00250
Alanine, aspartate and glutamate metabolism
ppii00260
Glycine, serine and threonine metabolism
ppii00270
Cysteine and methionine metabolism
ppii00300
Lysine biosynthesis
ppii00310
Lysine degradation
ppii00330
Arginine and proline metabolism
ppii00340
Histidine metabolism
ppii00360
Phenylalanine metabolism
ppii00550
Peptidoglycan biosynthesis
ppii00620
Pyruvate metabolism
KO pathway
ko00470
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