KEGG   PATHWAY: ppul00630
Entry
ppul00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pandoraea pulmonicola
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppul00630  Glyoxylate and dicarboxylate metabolism
ppul00630

Module
ppul_M00012  Glyoxylate cycle [PATH:ppul00630]
ppul_M00621  Glycine cleavage system [PATH:ppul00630]
Other DBs
GO: 0046487 0043648
Organism
Pandoraea pulmonicola [GN:ppul]
Gene
RO07_19660  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
RO07_13145  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RO07_23865  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
RO07_16390  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
RO07_23175  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
RO07_19680  malate synthase A [KO:K01638] [EC:2.3.3.9]
RO07_08890  malate synthase G [KO:K01638] [EC:2.3.3.9]
RO07_18175  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RO07_20660  excisionase [KO:K01647] [EC:2.3.3.1]
RO07_22580  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
RO07_18210  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RO07_24290  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
RO07_18160  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RO07_23945  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RO07_10510  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RO07_02520  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RO07_22425  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RO07_22905  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RO07_22930  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RO07_21895  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RO07_22925  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RO07_15990  methylaspartate ammonia-lyase [KO:K04835] [EC:4.3.1.2]
RO07_04330  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
RO07_03585  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
RO07_04335  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
RO07_03595  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
RO07_04340  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
RO07_13055  catalase [KO:K03781] [EC:1.11.1.6]
RO07_10410  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RO07_11695  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RO07_12805  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RO07_04285  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RO07_04235  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
RO07_05770  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RO07_01270  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
RO07_09355  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RO07_19110  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RO07_00900  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RO07_07675  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
RO07_07685  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
RO07_18760  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RO07_23105  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RO07_07680  glycine cleavage system protein H [KO:K02437]
RO07_19480  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
RO07_19475  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RO07_19470  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RO07_14905  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RO07_24265  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RO07_12065  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RO07_12820  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RO07_20315  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
RO07_16550  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
RO07_16555  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RO07_16735  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
RO07_16740  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
RO07_20305  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RO07_20300  formate dehydrogenase [KO:K00124]
RO07_16560  formate dehydrogenase [KO:K00124]
RO07_16745  formate dehydrogenase subunit beta [KO:K00124]
RO07_20295  formate dehydrogenase [KO:K00127]
RO07_16565  formate dehydrogenase subunit gamma [KO:K00127]
RO07_16750  formate dehydrogenase subunit gamma [KO:K00127]
RO07_00760  esterase [KO:K01432] [EC:3.5.1.9]
RO07_01630  arylformamidase [KO:K07130] [EC:3.5.1.9]
RO07_11370  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RO07_08635  formamidase [KO:K01455] [EC:3.5.1.49]
RO07_16590  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
RO07_16595  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
RO07_16625  formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppul00010  Glycolysis / Gluconeogenesis
ppul00020  Citrate cycle (TCA cycle)
ppul00030  Pentose phosphate pathway
ppul00053  Ascorbate and aldarate metabolism
ppul00071  Fatty acid degradation
ppul00230  Purine metabolism
ppul00250  Alanine, aspartate and glutamate metabolism
ppul00260  Glycine, serine and threonine metabolism
ppul00620  Pyruvate metabolism
ppul00710  Carbon fixation by Calvin cycle
ppul00750  Vitamin B6 metabolism
ppul00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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