KEGG   PATHWAY: prop00020
Entry
prop00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Propionimicrobium sp. PCR01-08-3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
prop00020  Citrate cycle (TCA cycle)
prop00020

Module
prop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:prop00020]
prop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:prop00020]
Other DBs
GO: 0006099
Organism
Propionimicrobium sp. PCR01-08-3 [GN:prop]
Gene
QQ658_09835  citrate synthase [KO:K01647] [EC:2.3.3.1]
QQ658_14595  citrate synthase [KO:K01647] [EC:2.3.3.1]
QQ658_07550  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QQ658_02660  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QQ658_05510  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
QQ658_07275  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QQ658_12485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QQ658_01915  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QQ658_01910  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QQ658_02610  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QQ658_08255  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QQ658_08250  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QQ658_08260  succinate dehydrogenase cytochrome b subunit [KO:K00241]
QQ658_09770  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QQ658_02645  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QQ658_01355  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
QQ658_04990  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QQ658_07600  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
QQ658_09170  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
QQ658_12480  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
QQ658_02750  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
QQ658_06705  2-oxoacid:acceptor oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
QQ658_12805  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
prop00010  Glycolysis / Gluconeogenesis
prop00053  Ascorbate and aldarate metabolism
prop00061  Fatty acid biosynthesis
prop00071  Fatty acid degradation
prop00190  Oxidative phosphorylation
prop00220  Arginine biosynthesis
prop00250  Alanine, aspartate and glutamate metabolism
prop00280  Valine, leucine and isoleucine degradation
prop00350  Tyrosine metabolism
prop00470  D-Amino acid metabolism
prop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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