KEGG   PATHWAY: psoa02025
Entry
psoa02025                   Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas solani
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
psoa02025  Biofilm formation - Pseudomonas aeruginosa
psoa02025

Organism
Pseudomonas solani [GN:psoa]
Gene
PSm6_00510  csrA_1; carbon storage regulator [KO:K03563]
PSm6_00630  [KO:K20971]
PSm6_03000  eraR; DNA-binding response regulator [KO:K07689]
PSm6_03110  ercS'; hybrid sensor histidine kinase/response regulator [KO:K20975] [EC:2.7.13.3]
PSm6_03540  csrA_2; carbon storage regulator [KO:K03563]
PSm6_06480  [KO:K23127]
PSm6_06800  gacS; histidine kinase [KO:K07678] [EC:2.7.13.3]
PSm6_08090  wspR; diguanylate cyclase response regulator [KO:K11444] [EC:2.7.7.65]
PSm6_08100  cheB3; chemotaxis response regulator protein-glutamate methylesterase of group 3 operon [KO:K13491] [EC:3.1.1.61]
PSm6_08110  [KO:K13490]
PSm6_08120  wspD; chemotaxis protein CheW [KO:K13489]
PSm6_08140  [KO:K13488]
PSm6_08150  wspA; chemotaxis transducer [KO:K13487]
PSm6_09940  [KO:K19291] [EC:2.4.1.33]
PSm6_10030  algA; alginate biosynthesis protein AlgA [KO:K16011] [EC:2.7.7.13 5.3.1.8]
PSm6_12970  [KO:K03563]
PSm6_13790  [KO:K20972]
PSm6_14750  [KO:K23127]
PSm6_14760  fimX; protein FimX [KO:K21025]
PSm6_14860  cpdA; 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [KO:K03651] [EC:3.1.4.53]
PSm6_18050  [KO:K11895]
PSm6_18080  [KO:K11891]
PSm6_18140  [KO:K11907]
PSm6_18150  [KO:K11903]
PSm6_18180  [KO:K11893]
PSm6_18190  [KO:K11900]
PSm6_18200  [KO:K11901]
PSm6_18490  [KO:K10914]
PSm6_24430  pilG; protein PilG [KO:K02657]
PSm6_24440  pilH; protein PilH [KO:K02658]
PSm6_24450  pilI; protein PilI [KO:K02659]
PSm6_24460  pilJ; protein PilJ [KO:K02660]
PSm6_24480  [KO:K06596]
PSm6_24510  chpC; chemotaxis protein [KO:K06598]
PSm6_26730  trpE; anthranilate synthase component 1 [KO:K01657] [EC:4.1.3.27]
PSm6_26740  trpG; glutamine amidotransferase [KO:K01658] [EC:4.1.3.27]
PSm6_26770  vfr; cyclic AMP receptor-like protein [KO:K10914]
PSm6_29580  ladS; hybrid sensor histidine kinase/response regulator [KO:K20971]
PSm6_33210  bifA; GGDEF-domain containing protein [KO:K21024] [EC:3.1.4.52]
PSm6_33580  [KO:K21019] [EC:2.7.7.65]
PSm6_34930  [KO:K21019] [EC:2.7.7.65]
PSm6_37070  cyaB; protein CyaB [KO:K01768] [EC:4.6.1.1]
PSm6_38370  [KO:K11891]
PSm6_41850  flgM; flagellar biosynthesis protein FlgM [KO:K02398]
PSm6_42210  fleQ; transcriptional regulator FleQ [KO:K10941]
PSm6_42300  [KO:K20978]
PSm6_42310  [KO:K20977]
PSm6_42320  [KO:K20976]
PSm6_42450  fliA; RNA polymerase sigma factor FliA [KO:K02405]
PSm6_47750  gacA; response regulator GacA [KO:K07689]
PSm6_47790  csrA_3; carbon storage regulator [KO:K03563]
PSm6_52670  ppkA; serine/threonine protein kinase [KO:K11912] [EC:2.7.11.1]
PSm6_52680  pppA; serine/threonine protein phosphatase [KO:K11915] [EC:3.1.3.16]
PSm6_52690  [KO:K11890]
PSm6_52700  icmF1; type VI secretion protein IcmF [KO:K11891]
PSm6_52720  [KO:K11893]
PSm6_52740  fha1; phosphopeptide-binding protein [KO:K11913]
PSm6_52750  [KO:K11902]
PSm6_52760  [KO:K11901]
PSm6_52770  [KO:K11900]
PSm6_52780  hcp1; protein hcp1 [KO:K11903]
PSm6_52840  [KO:K11895]
PSm6_52850  clpV1; protein ClpV1 [KO:K11907]
PSm6_56910  [KO:K03563]
PSm6_58450  [KO:K20973] [EC:2.7.13.3]
PSm6_60120  [KO:K20974] [EC:2.7.13.3]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
psoa02024  Quorum sensing
psoa02040  Flagellar assembly
psoa03070  Bacterial secretion system
KO pathway
ko02025   

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