KEGG   PATHWAY: psom00630
Entry
psom00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Papaver somniferum (opium poppy)
Class
Metabolism; Carbohydrate metabolism
Pathway map
psom00630  Glyoxylate and dicarboxylate metabolism
psom00630

Module
psom_M00012  Glyoxylate cycle [PATH:psom00630]
psom_M00532  Photorespiration [PATH:psom00630]
psom_M00621  Glycine cleavage system [PATH:psom00630]
Other DBs
GO: 0046487 0043648
Organism
Papaver somniferum (opium poppy) [GN:psom]
Gene
113285749  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1 4.1.3.30]
113333522  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
113271453  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
113281273  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
113346882  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
113333087  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
113281538  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
113276535  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
113317978  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
113297221  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
113302441  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
113322485  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
113313205  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
113349930  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
113297073  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
113331979  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
113334105  malate dehydrogenase, chloroplastic-like isoform X1 [KO:K00026] [EC:1.1.1.37]
113302262  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
113317930  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
113347368  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
113347395  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
113321492  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
113309208  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
113346436  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
113356378  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
113318393  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
113289016  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
113304963  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
113287928  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
113291462  aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
113348578  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
113288169  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
113297800  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
113302006  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
113301412  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
113288299  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
113295425  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
113326911  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
113335533  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
113301081  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
113287338  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
113283254  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
113336126  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
113286808  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
113298523  catalase-2 [KO:K03781] [EC:1.11.1.6]
113333046  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
113289593  catalase-2-like [KO:K03781] [EC:1.11.1.6]
113346811  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
113305286  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
113301760  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
113315169  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
113295541  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
113334869  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
113358223  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
113288971  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
113291123  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
113317744  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
113346464  phosphoglycolate phosphatase 2-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
113348739  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
26895709  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
113306566  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113306640  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113275056  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113329509  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113329536  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113293231  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
113304659  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113318867  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113318875  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113318903  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113330054  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113356035  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113356086  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
113361997  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
113313525  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
113321704  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
113288598  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
113318436  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
113287399  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
113309085  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
113320934  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
113275336  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
113317948  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
113282526  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
113303336  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
113310554  glutamine synthetase nodule isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
113336696  glutamine synthetase cytosolic isozyme 1-like [KO:K01915] [EC:6.3.1.2]
113299550  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
113350154  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
113357290  glutamine synthetase cytosolic isozyme 1-like [KO:K01915] [EC:6.3.1.2]
113321755  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113310470  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113327789  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113339002  serine hydroxymethyltransferase 3, chloroplastic-like isoform X1 [KO:K00600] [EC:2.1.2.1]
113282885  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
113274042  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113296660  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
113290478  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113312802  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113312581  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113333776  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113328516  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
113280554  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113271654  serine hydroxymethyltransferase 2, mitochondrial-like isoform X1 [KO:K00600] [EC:2.1.2.1]
113312834  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113283239  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
113286604  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113286616  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
113302650  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113279749  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113279750  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113349445  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113353136  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113362255  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113356303  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
113361376  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113351391  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113361126  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
113347879  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
113349499  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
113303865  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
113287980  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
113347002  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
113333129  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
113334818  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
113358155  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
113322311  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
113288335  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
113345808  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
113290122  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
113312771  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
113279389  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
113349030  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
113348325  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
113358714  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
113284280  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
113355464  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
113288582  uncharacterized protein LOC113288582 isoform X1 [KO:K01455] [EC:3.5.1.49]
113274953  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
113304513  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
psom00010  Glycolysis / Gluconeogenesis
psom00020  Citrate cycle (TCA cycle)
psom00030  Pentose phosphate pathway
psom00053  Ascorbate and aldarate metabolism
psom00071  Fatty acid degradation
psom00230  Purine metabolism
psom00250  Alanine, aspartate and glutamate metabolism
psom00260  Glycine, serine and threonine metabolism
psom00620  Pyruvate metabolism
psom00710  Carbon fixation by Calvin cycle
psom00750  Vitamin B6 metabolism
psom00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system