KEGG   PATHWAY: psw00020
Entry
psw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas cremoricolorata
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psw00020  Citrate cycle (TCA cycle)
psw00020

Module
psw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psw00020]
psw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psw00020]
psw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psw00020]
psw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psw00020]
psw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psw00020]
Other DBs
GO: 0006099
Organism
Pseudomonas cremoricolorata [GN:psw]
Gene
LK03_14045  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LK03_20325  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LK03_19895  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LK03_19630  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LK03_14070  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
LK03_14075  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LK03_14080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LK03_12385  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LK03_14090  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
LK03_14085  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
LK03_06710  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
LK03_14060  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
LK03_14065  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LK03_14050  succinate dehydrogenase [KO:K00241]
LK03_14055  succinate dehydrogenase [KO:K00242]
LK03_01375  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LK03_21600  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LK03_01665  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
LK03_09405  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LK03_12010  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LK03_17215  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LK03_05760  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
LK03_05755  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
LK03_04995  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
LK03_04030  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LK03_04035  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psw00010  Glycolysis / Gluconeogenesis
psw00053  Ascorbate and aldarate metabolism
psw00061  Fatty acid biosynthesis
psw00071  Fatty acid degradation
psw00190  Oxidative phosphorylation
psw00220  Arginine biosynthesis
psw00250  Alanine, aspartate and glutamate metabolism
psw00280  Valine, leucine and isoleucine degradation
psw00350  Tyrosine metabolism
psw00470  D-Amino acid metabolism
psw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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