KEGG   PATHWAY: pter00630
Entry
pter00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia terrae
Class
Metabolism; Carbohydrate metabolism
Pathway map
pter00630  Glyoxylate and dicarboxylate metabolism
pter00630

Module
pter_M00012  Glyoxylate cycle [PATH:pter00630]
pter_M00621  Glycine cleavage system [PATH:pter00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia terrae [GN:pter]
Gene
C2L65_00920  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
C2L65_00980  [KO:K00626] [EC:2.3.1.9]
C2L65_01670  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C2L65_02575  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
C2L65_02875  [KO:K01647] [EC:2.3.3.1]
C2L65_03850  [KO:K00126] [EC:1.17.1.9]
C2L65_03855  [KO:K00123] [EC:1.17.1.9]
C2L65_03860  [KO:K00124]
C2L65_03865  [KO:K00127]
C2L65_04315  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
C2L65_04360  [KO:K01091] [EC:3.1.3.18]
C2L65_05525  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C2L65_05610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2L65_06150  [KO:K01638] [EC:2.3.3.9]
C2L65_06170  [KO:K01637] [EC:4.1.3.1 4.1.3.30]
C2L65_06800  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
C2L65_07175  [KO:K03781] [EC:1.11.1.6]
C2L65_08270  [KO:K00865] [EC:2.7.1.165]
C2L65_08455  [KO:K00626] [EC:2.3.1.9]
C2L65_08480  [KO:K00023] [EC:1.1.1.36]
C2L65_08485  [KO:K00626] [EC:2.3.1.9]
C2L65_08820  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
C2L65_08825  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
C2L65_08830  [KO:K00042] [EC:1.1.1.60]
C2L65_09265  [KO:K00626] [EC:2.3.1.9]
C2L65_09340  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2L65_09910  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
C2L65_10135  [KO:K01895] [EC:6.2.1.1]
C2L65_10220  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C2L65_11095  [KO:K05825] [EC:2.6.1.-]
C2L65_12525  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
C2L65_12655  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C2L65_12990  [KO:K00104] [EC:1.1.99.14]
C2L65_12995  [KO:K11472] [EC:1.1.99.14]
C2L65_13000  [KO:K11473] [EC:1.1.99.14]
C2L65_13030  [KO:K03781] [EC:1.11.1.6]
C2L65_13325  [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C2L65_13945  [KO:K01091] [EC:3.1.3.18]
C2L65_15625  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
C2L65_15630  gcvH; glycine cleavage system protein H [KO:K02437]
C2L65_15635  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
C2L65_17115  [KO:K03781] [EC:1.11.1.6]
C2L65_17870  [KO:K00626] [EC:2.3.1.9]
C2L65_17970  [KO:K00123] [EC:1.17.1.9]
C2L65_17975  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
C2L65_17980  fdxH; formate dehydrogenase subunit beta [KO:K00124]
C2L65_17985  [KO:K00127]
C2L65_18635  [KO:K01637] [EC:4.1.3.1 4.1.3.30]
C2L65_19055  [KO:K01915] [EC:6.3.1.2]
C2L65_19955  [KO:K01577] [EC:4.1.1.8]
C2L65_19960  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
C2L65_19975  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
C2L65_20110  [KO:K03781] [EC:1.11.1.6]
C2L65_20205  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
C2L65_20430  [KO:K01895] [EC:6.2.1.1]
C2L65_21415  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C2L65_21470  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C2L65_22365  [KO:K03781] [EC:1.11.1.6]
C2L65_22555  [KO:K00122] [EC:1.17.1.9]
C2L65_22905  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
C2L65_23215  [KO:K00382] [EC:1.8.1.4]
C2L65_23925  [KO:K17865] [EC:4.2.1.55]
C2L65_24170  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C2L65_24315  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C2L65_25575  [KO:K01915] [EC:6.3.1.2]
C2L65_26030  [KO:K00605] [EC:2.1.2.10]
C2L65_26080  [KO:K00605] [EC:2.1.2.10]
C2L65_26120  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
C2L65_26260  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C2L65_26265  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
C2L65_26270  [KO:K00018] [EC:1.1.1.29]
C2L65_26275  [KO:K14067] [EC:6.2.1.9]
C2L65_26280  [KO:K08692] [EC:6.2.1.9]
C2L65_26290  [KO:K08691] [EC:4.1.3.24 4.1.3.25]
C2L65_26320  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C2L65_26345  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
C2L65_27670  [KO:K00023] [EC:1.1.1.36]
C2L65_27800  [KO:K07248] [EC:1.2.1.22 1.2.1.21]
C2L65_28660  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C2L65_28695  [KO:K00024] [EC:1.1.1.37]
C2L65_28710  [KO:K01659] [EC:2.3.3.5]
C2L65_28725  acnA; aconitate hydratase AcnA [KO:K27802]
C2L65_29190  [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
C2L65_29965  [KO:K01455] [EC:3.5.1.49]
C2L65_30040  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C2L65_30350  [KO:K01816] [EC:5.3.1.22]
C2L65_30940  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C2L65_31375  [KO:K01659] [EC:2.3.3.5]
C2L65_32245  [KO:K01638] [EC:2.3.3.9]
C2L65_32470  [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C2L65_32490  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
C2L65_32545  [KO:K00023] [EC:1.1.1.36]
C2L65_32975  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
C2L65_33845  [KO:K00018] [EC:1.1.1.29]
C2L65_33900  [KO:K00042] [EC:1.1.1.60]
C2L65_34225  rbcL; ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
C2L65_34230  [KO:K01602] [EC:4.1.1.39]
C2L65_35520  [KO:K00626] [EC:2.3.1.9]
C2L65_35600  [KO:K00626] [EC:2.3.1.9]
C2L65_36245  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2L65_36900  [KO:K01647] [EC:2.3.3.1]
C2L65_36945  [KO:K03781] [EC:1.11.1.6]
C2L65_37225  [KO:K01847] [EC:5.4.99.2]
C2L65_38295  [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C2L65_38335  [KO:K00104] [EC:1.1.99.14]
C2L65_38340  [KO:K11472] [EC:1.1.99.14]
C2L65_38345  [KO:K11473] [EC:1.1.99.14]
C2L65_40415  [KO:K01647] [EC:2.3.3.1]
C2L65_41190  [KO:K01647] [EC:2.3.3.1]
C2L65_42195  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C2L65_42390  [KO:K17865] [EC:4.2.1.55]
C2L65_44135  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C2L65_44195  [KO:K03781] [EC:1.11.1.6]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pter00010  Glycolysis / Gluconeogenesis
pter00020  Citrate cycle (TCA cycle)
pter00030  Pentose phosphate pathway
pter00053  Ascorbate and aldarate metabolism
pter00071  Fatty acid degradation
pter00230  Purine metabolism
pter00250  Alanine, aspartate and glutamate metabolism
pter00260  Glycine, serine and threonine metabolism
pter00270  Cysteine and methionine metabolism
pter00620  Pyruvate metabolism
pter00710  Carbon fixation by Calvin cycle
pter00750  Vitamin B6 metabolism
pter00910  Nitrogen metabolism
KO pathway
ko00630   

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