KEGG   PATHWAY: ptn00020
Entry
ptn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudoalteromonas translucida KMM 520
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptn00020  Citrate cycle (TCA cycle)
ptn00020

Module
ptn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptn00020]
ptn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptn00020]
ptn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptn00020]
ptn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptn00020]
ptn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptn00020]
Other DBs
GO: 0006099
Organism
Pseudoalteromonas translucida KMM 520 [GN:ptn]
Gene
PTRA_a2049  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PTRA_a0173  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PTRA_a0202  acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PTRA_a1647  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PTRA_a2136  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PTRA_b0669  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
PTRA_a2044  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PTRA_a2043  sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
PTRA_a0862  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PTRA_a0424  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PTRA_a2040  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
PTRA_a2041  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
PTRA_a2445  aarC; succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
PTRA_a2046  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PTRA_a2045  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PTRA_a2047  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
PTRA_a1366  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
PTRA_a0056  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
PTRA_a3193  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PTRA_a0244  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PTRA_a0420  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
PTRA_a0423  pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptn00010  Glycolysis / Gluconeogenesis
ptn00053  Ascorbate and aldarate metabolism
ptn00061  Fatty acid biosynthesis
ptn00071  Fatty acid degradation
ptn00190  Oxidative phosphorylation
ptn00220  Arginine biosynthesis
ptn00250  Alanine, aspartate and glutamate metabolism
ptn00280  Valine, leucine and isoleucine degradation
ptn00350  Tyrosine metabolism
ptn00470  D-Amino acid metabolism
ptn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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