KEGG   PATHWAY: ptr00020
Entry
ptr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pan troglodytes (chimpanzee)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ptr00020  Citrate cycle (TCA cycle)
ptr00020

Module
ptr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ptr00020]
ptr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ptr00020]
ptr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ptr00020]
ptr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ptr00020]
ptr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ptr00020]
Other DBs
GO: 0006099
Organism
Pan troglodytes (chimpanzee) [GN:ptr]
Gene
100615025  [KO:K01647] [EC:2.3.3.1]
104003784  ACO2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
107970891  [KO:K00234] [EC:1.3.5.1]
107974583  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X2 [KO:K00234] [EC:1.3.5.1]
112207632  [KO:K00237]
450453  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
451356  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
452711  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
452807  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
453039  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X4 [KO:K00658] [EC:2.3.1.61]
453565  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
453645  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
454672  ACLY; ATP-citrate synthase isoform X4 [KO:K01648] [EC:2.3.3.8]
456526  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
457851  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
458048  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
458362  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X2 [KO:K01596] [EC:4.1.1.32]
459271  MDH1; malate dehydrogenase, cytoplasmic isoform 1 [KO:K00025] [EC:1.1.1.37]
460113  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
460492  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
463484  MDH2; malate dehydrogenase, mitochondrial isoform X2 [KO:K00026] [EC:1.1.1.37]
463861  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
465034  ACO1; cytoplasmic aconitate hydratase isoform X2 [KO:K01681] [EC:4.2.1.3]
465525  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
466780  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
470417  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
470832  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
471255  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
737096  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
738474  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X4 [KO:K00164] [EC:1.2.4.2]
741179  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
746229  CS; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
747462  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X4 [KO:K00236]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ptr00010  Glycolysis / Gluconeogenesis
ptr00053  Ascorbate and aldarate metabolism
ptr00061  Fatty acid biosynthesis
ptr00062  Fatty acid elongation
ptr00071  Fatty acid degradation
ptr00190  Oxidative phosphorylation
ptr00220  Arginine biosynthesis
ptr00250  Alanine, aspartate and glutamate metabolism
ptr00280  Valine, leucine and isoleucine degradation
ptr00350  Tyrosine metabolism
ptr00470  D-Amino acid metabolism
ptr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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