KEGG PATHWAY: pym00630

KEGG

PATHWAY: pym00630

Entry

pym00630                    Pathway

Name

Glyoxylate and dicarboxylate metabolism - Pseudomonas yamanorum

Class

Metabolism; Carbohydrate metabolism

Pathway map

Glyoxylate and dicarboxylate metabolism

Module

Glycine cleavage system [PATH:pym00630]

Other DBs

GO:	0046487 0043648

Organism

Pseudomonas yamanorum [GN:pym]

Gene

Isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]

Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]

Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]

Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]

Malate synthase G [KO:K01638] [EC:2.3.3.9]

Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]

2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]

Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]

Aconitate hydratase 2 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]

3-ketoacyl-CoA thiolase Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]

3-ketoacyl-CoA thiolase Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]

3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]

3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]

3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]

Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]

3-ketoacyl-CoA thiolase Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]

enoyl-CoA hydratase, R-specific [KO:K17865] [EC:4.2.1.55]

Catalase [KO:K03781] [EC:1.11.1.6]

Catalase [KO:K03781] [EC:1.11.1.6]

Catalase [KO:K03781] [EC:1.11.1.6]

Catalase [KO:K03781] [EC:1.11.1.6]

Glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]

D-3-phosphoglycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]

hypothetical protein [KO:K01091] [EC:3.1.3.18]

Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]

Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]

glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]

glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]

glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]

glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]

Glutamine synthetase type I [KO:K01915] [EC:6.3.1.2]

glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]

glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]

Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]

Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]

Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) [KO:K00281] [EC:1.4.4.2]

Aminomethyltransferase (glycine cleavage system T protein) [KO:K00605] [EC:2.1.2.10]

Aminomethyltransferase (glycine cleavage system T protein) [KO:K00605] [EC:2.1.2.10]

Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]

Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]

Glycine cleavage system H protein [KO:K02437]

Glycine cleavage system H protein [KO:K02437]

Glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]

Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]

Glycerate kinase [KO:K00865] [EC:2.7.1.165]

D-glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]

Aldehyde dehydrogenase A [KO:K07248] [EC:1.2.1.22 1.2.1.21]

Aldehyde dehydrogenase A [KO:K07248] [EC:1.2.1.22 1.2.1.21]

Tartrate dehydrogenase Tartrate decarboxylase D-malic enzyme [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]

4-hydroxy-2-oxoglutarate aldolase 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]

Kynurenine formamidase, bacterial [KO:K07130] [EC:3.5.1.9]

Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]

Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]

Formamidase [KO:K01455] [EC:3.5.1.49]

putative acetamidase/formamidase [KO:K01455] [EC:3.5.1.49]

N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]

Compound

Oxygen

CO2

Ammonia

Pyruvate

Acetyl-CoA

L-Glutamate

2-Oxoglutarate

Hydrogen peroxide

Acetate

Oxaloacetate

Glycine

Succinate

Glyoxylate

Formate

L-Glutamine

L-Serine

Succinyl-CoA

Propanoyl-CoA

Glycerone phosphate

Butanoyl-CoA

(S)-Malate

Citrate

Glycolate

Hydroxypyruvate

3-Phospho-D-glycerate

Oxalate

D-Glycerate

Glycolaldehyde

Isocitrate

Oxalyl-CoA

Acetoacetyl-CoA

cis-Aconitate

meso-Tartaric acid

2-Phospho-D-glycerate

(S)-Methylmalonyl-CoA

Formyl-CoA

Crotonoyl-CoA

Pentanoyl-CoA

(R,R)-Tartaric acid

Dihydroxyfumarate

2-Phosphoglycolate

4-Hydroxy-2-oxoglutarate

2-Hydroxy-3-oxopropanoate

D-Ribulose 1,5-bisphosphate

(R)-Methylmalonyl-CoA

Ethylene glycol

Mesaconate

3-Ethylmalate

3-Oxalomalate

3-Propylmalate

Formyl phosphate

2-Hydroxy-3-oxoadipate

2-Hydroxy-3-oxosuccinate

trans-2,3-Epoxysuccinate

(R)-3-Hydroxybutanoyl-CoA

L-threo-3-Methylaspartate

L-Malyl-CoA

L-erythro-3-Methylmalyl-CoA

2-Methylfumaryl-CoA

N-Formylderivatives

(2S)-Ethylmalonyl-CoA

(2S)-Methylsuccinyl-CoA

(2R)-Ethylmalonyl-CoA

D-Ribulose 1-phosphate

Reference

Authors

Njau RK, Herndon CA, Hawes JW.

Title

Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.

Journal

J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200

Reference

Authors

Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G

Title

Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.

Journal

J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07

Reference

Authors

Erb TJ, Retey J, Fuchs G, Alber BE

Title

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Journal

J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200

Reference

Authors

Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM

Title

Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.

Journal

Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741

Reference

Authors

Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A

Title

Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.

Journal

Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910

Reference

Authors

Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA

Title

A methylaspartate cycle in haloarchaea.

Journal

Science 331:334-7 (2011)
DOI:10.1126/science.1196544

Reference

Authors

Serrano JA, Bonete MJ

Title

Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.

Journal

Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9

Related
pathway

Glycolysis / Gluconeogenesis

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Ascorbate and aldarate metabolism

Fatty acid degradation

Purine metabolism

Alanine, aspartate and glutamate metabolism

Glycine, serine and threonine metabolism

Pyruvate metabolism

Carbon fixation by Calvin cycle

Vitamin B6 metabolism

Nitrogen metabolism

KO pathway

LinkDB

DBGET integrated database retrieval system