KEGG   PATHWAY: raa00020
Entry
raa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rahnella aquatilis HX2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
raa00020  Citrate cycle (TCA cycle)
raa00020

Module
raa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:raa00020]
raa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:raa00020]
raa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:raa00020]
raa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:raa00020]
raa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:raa00020]
Other DBs
GO: 0006099
Organism
Rahnella aquatilis HX2 [GN:raa]
Gene
Q7S_00620  [KO:K00116] [EC:1.1.5.4]
Q7S_00660  [KO:K00116] [EC:1.1.5.4]
Q7S_01275  [KO:K01610] [EC:4.1.1.49]
Q7S_02045  [KO:K00247]
Q7S_02050  [KO:K00246]
Q7S_02055  [KO:K00245] [EC:1.3.5.1]
Q7S_02060  [KO:K00244] [EC:1.3.5.1]
Q7S_02315  [KO:K00024] [EC:1.1.1.37]
Q7S_10545  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Q7S_11155  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Q7S_12960  [KO:K27802]
Q7S_14725  [KO:K00031] [EC:1.1.1.42]
Q7S_15870  [KO:K01902] [EC:6.2.1.5]
Q7S_15875  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Q7S_15880  [KO:K00658] [EC:2.3.1.61]
Q7S_15885  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Q7S_15890  [KO:K00240] [EC:1.3.5.1]
Q7S_15895  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q7S_15900  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
Q7S_15905  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
Q7S_15910  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Q7S_18800  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Q7S_18855  [KO:K00382] [EC:1.8.1.4]
Q7S_18865  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
Q7S_18870  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
Q7S_25341  [KO:K01676] [EC:4.2.1.2]
Q7S_25911  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
raa00010  Glycolysis / Gluconeogenesis
raa00053  Ascorbate and aldarate metabolism
raa00061  Fatty acid biosynthesis
raa00071  Fatty acid degradation
raa00190  Oxidative phosphorylation
raa00220  Arginine biosynthesis
raa00250  Alanine, aspartate and glutamate metabolism
raa00280  Valine, leucine and isoleucine degradation
raa00350  Tyrosine metabolism
raa00470  D-Amino acid metabolism
raa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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