KEGG   PATHWAY: rban00020
Entry
rban00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium bangladeshense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rban00020  Citrate cycle (TCA cycle)
rban00020

Module
rban_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rban00020]
rban_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rban00020]
rban_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rban00020]
rban_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rban00020]
Other DBs
GO: 0006099
Organism
Rhizobium bangladeshense [GN:rban]
Gene
J2J98_00185  [KO:K01610] [EC:4.1.1.49]
J2J98_02885  [KO:K18118] [EC:2.8.3.18]
J2J98_09970  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J2J98_10005  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
J2J98_10010  [KO:K00162] [EC:1.2.4.1]
J2J98_10015  [KO:K00627] [EC:2.3.1.12]
J2J98_10030  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J2J98_10895  [KO:K01647] [EC:2.3.3.1]
J2J98_10900  [KO:K01647] [EC:2.3.3.1]
J2J98_11620  [KO:K00031] [EC:1.1.1.42]
J2J98_11940  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J2J98_11955  [KO:K01676] [EC:4.2.1.2]
J2J98_19765  [KO:K00382] [EC:1.8.1.4]
J2J98_19785  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J2J98_19795  [KO:K00164] [EC:1.2.4.2]
J2J98_19800  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J2J98_19805  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J2J98_19810  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J2J98_19825  [KO:K00240] [EC:1.3.5.1]
J2J98_19830  [KO:K00239] [EC:1.3.5.1]
J2J98_19835  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
J2J98_19840  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
J2J98_20065  acnA; aconitate hydratase AcnA [KO:K27802]
J2J98_20355  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
J2J98_27000  [KO:K00031] [EC:1.1.1.42]
J2J98_28105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rban00010  Glycolysis / Gluconeogenesis
rban00053  Ascorbate and aldarate metabolism
rban00061  Fatty acid biosynthesis
rban00071  Fatty acid degradation
rban00190  Oxidative phosphorylation
rban00220  Arginine biosynthesis
rban00250  Alanine, aspartate and glutamate metabolism
rban00280  Valine, leucine and isoleucine degradation
rban00350  Tyrosine metabolism
rban00470  D-Amino acid metabolism
rban00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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