KEGG   PATHWAY: rec00020
Entry
rec00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium etli CIAT 652
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rec00020  Citrate cycle (TCA cycle)
rec00020

Module
rec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rec00020]
rec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rec00020]
rec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rec00020]
rec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rec00020]
Other DBs
GO: 0006099
Organism
Rhizobium etli CIAT 652 [GN:rec]
Gene
RHECIAT_CH0002269  gltA2; citrate synthase protein [KO:K01647] [EC:2.3.3.1]
RHECIAT_CH0002270  citA; citrate synthase I protein [KO:K01647] [EC:2.3.3.1]
RHECIAT_CH0002023  gltA1; citrate synthase protein [KO:K01647] [EC:2.3.3.1]
RHECIAT_CH0004227  acnA; aconitate hydratase protein [KO:K01681] [EC:4.2.1.3]
RHECIAT_CH0002414  icd; isocitrate dehydrogenase (NADP(+)) protein [KO:K00031] [EC:1.1.1.42]
RHECIAT_CH0004170  sucA; oxoglutarate dehydrogenase E1 protein [KO:K00164] [EC:1.2.4.2]
RHECIAT_CH0004168  sucB; dihydrolipoamide S-succinyltransferase protein [KO:K00658] [EC:2.3.1.61]
RHECIAT_CH0004164  lpdA2; dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
RHECIAT_CH0002035  lpdA1; dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
RHECIAT_CH0004171  sucD; succinyl-CoA synthetase protein, alpha subunit [KO:K01902] [EC:6.2.1.5]
RHECIAT_CH0004173  sucC; succinyl-CoA synthetase protein, beta subunit [KO:K01903] [EC:6.2.1.5]
RHECIAT_CH0004179  sdhA; succinate dehydrogenase protein, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RHECIAT_CH0004178  sdhB; succinate dehydrogenase protein, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RHECIAT_CH0004181  sdhC; succinate dehydrogenase protein, cytochrome b subunit [KO:K00241]
RHECIAT_CH0004180  sdhD; succinate dehydrogenase protein, membrane anchor subunit [KO:K00242]
RHECIAT_CH0002477  fumB; fumarate hydratase protein, class I [KO:K01676] [EC:4.2.1.2]
RHECIAT_CH0002474  fumC; fumarate hydratase protein, class II [KO:K01679] [EC:4.2.1.2]
RHECIAT_CH0004174  mdh; malate dehydrogenase protein [KO:K00024] [EC:1.1.1.37]
RHECIAT_CH0004290  pyc; pyruvate carboxylase protein [KO:K01958] [EC:6.4.1.1]
RHECIAT_CH0000039  pckA; phosphoenolpyruvate carboxykinase protein [KO:K01610] [EC:4.1.1.49]
RHECIAT_CH0002030  pdhA1; pyruvate dehydrogenase (acetyl-transferring) protein, alpha subunit [KO:K00161] [EC:1.2.4.1]
RHECIAT_CH0002031  pdhA2; pyruvate dehydrogenase (acetyl-transferring) protein, beta subunit [KO:K00162] [EC:1.2.4.1]
RHECIAT_CH0002032  pdhC; dihydrolipoamide S-acetyltransferase protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rec00010  Glycolysis / Gluconeogenesis
rec00053  Ascorbate and aldarate metabolism
rec00061  Fatty acid biosynthesis
rec00071  Fatty acid degradation
rec00190  Oxidative phosphorylation
rec00220  Arginine biosynthesis
rec00250  Alanine, aspartate and glutamate metabolism
rec00280  Valine, leucine and isoleucine degradation
rec00350  Tyrosine metabolism
rec00470  D-Amino acid metabolism
rec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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