KEGG   PATHWAY: rhj00020
Entry
rhj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodoblastus sp. SSC7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhj00020  Citrate cycle (TCA cycle)
rhj00020

Module
rhj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhj00020]
rhj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhj00020]
rhj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhj00020]
rhj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhj00020]
Other DBs
GO: 0006099
Organism
Rhodoblastus sp. SSC7 [GN:rhj]
Gene
HZY79_13240  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HZY79_04625  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HZY79_11130  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZY79_06435  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HZY79_06440  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HZY79_00840  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZY79_06450  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZY79_05090  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HZY79_05095  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HZY79_09480  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HZY79_05100  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
HZY79_06430  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HZY79_06425  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HZY79_09580  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HZY79_05530  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HZY79_06385  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HZY79_05520  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HZY79_02650  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HZY79_08550  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HZY79_06415  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HZY79_01515  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HZY79_00825  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HZY79_12880  hypothetical protein [KO:K00161] [EC:1.2.4.1]
HZY79_00830  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HZY79_03645  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
HZY79_03650  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
HZY79_03640  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhj00010  Glycolysis / Gluconeogenesis
rhj00061  Fatty acid biosynthesis
rhj00071  Fatty acid degradation
rhj00190  Oxidative phosphorylation
rhj00220  Arginine biosynthesis
rhj00250  Alanine, aspartate and glutamate metabolism
rhj00280  Valine, leucine and isoleucine degradation
rhj00350  Tyrosine metabolism
rhj00470  D-Amino acid metabolism
rhj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system