KEGG   PATHWAY: rhq00020
Entry
rhq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus sp. p52
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhq00020  Citrate cycle (TCA cycle)
rhq00020

Module
rhq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rhq00020]
rhq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhq00020]
rhq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhq00020]
rhq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhq00020]
rhq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhq00020]
Other DBs
GO: 0006099
Organism
Rhodococcus sp. p52 [GN:rhq]
Gene
IM25_10435  citrate synthase [KO:K01647] [EC:2.3.3.1]
IM25_10470  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
IM25_13085  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IM25_16685  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
IM25_22365  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IM25_17165  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
IM25_12505  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IM25_01670  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IM25_03525  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IM25_03520  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IM25_10945  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IM25_10940  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IM25_14810  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
IM25_19580  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IM25_22330  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IM25_19575  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IM25_22335  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IM25_22320  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IM25_22325  succinate dehydrogenase [KO:K00242]
IM25_12120  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IM25_11685  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
IM25_15285  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IM25_17110  malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
IM25_14855  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IM25_03305  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
IM25_20225  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IM25_20060  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhq00010  Glycolysis / Gluconeogenesis
rhq00061  Fatty acid biosynthesis
rhq00062  Fatty acid elongation
rhq00071  Fatty acid degradation
rhq00190  Oxidative phosphorylation
rhq00220  Arginine biosynthesis
rhq00250  Alanine, aspartate and glutamate metabolism
rhq00280  Valine, leucine and isoleucine degradation
rhq00350  Tyrosine metabolism
rhq00470  D-Amino acid metabolism
rhq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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