KEGG   PATHWAY: rlw00020
Entry
rlw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium laguerreae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlw00020  Citrate cycle (TCA cycle)
rlw00020

Module
rlw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rlw00020]
rlw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rlw00020]
rlw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rlw00020]
rlw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rlw00020]
Other DBs
GO: 0006099
Organism
Rhizobium laguerreae [GN:rlw]
Gene
RlegWSM1455_08945  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RlegWSM1455_10270  citrate synthase [KO:K01647] [EC:2.3.3.1]
RlegWSM1455_10275  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
RlegWSM1455_20365  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RlegWSM1455_10915  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RlegWSM1455_20035  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RlegWSM1455_20025  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
RlegWSM1455_20005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RlegWSM1455_33320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RlegWSM1455_09005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RlegWSM1455_20040  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RlegWSM1455_20045  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RlegWSM1455_20070  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RlegWSM1455_20065  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RlegWSM1455_20080  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RlegWSM1455_20075  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
RlegWSM1455_11255  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RlegWSM1455_11245  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RlegWSM1455_20050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RlegWSM1455_20910  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RlegWSM1455_21550  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
RlegWSM1455_08980  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
RlegWSM1455_08985  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
RlegWSM1455_08990  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rlw00010  Glycolysis / Gluconeogenesis
rlw00053  Ascorbate and aldarate metabolism
rlw00061  Fatty acid biosynthesis
rlw00071  Fatty acid degradation
rlw00190  Oxidative phosphorylation
rlw00220  Arginine biosynthesis
rlw00250  Alanine, aspartate and glutamate metabolism
rlw00280  Valine, leucine and isoleucine degradation
rlw00350  Tyrosine metabolism
rlw00470  D-Amino acid metabolism
rlw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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