KEGG   PATHWAY: rlw00630
Entry
rlw00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium laguerreae
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlw00630  Glyoxylate and dicarboxylate metabolism
rlw00630

Module
rlw_M00012  Glyoxylate cycle [PATH:rlw00630]
rlw_M00621  Glycine cleavage system [PATH:rlw00630]
rlw_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rlw00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium laguerreae [GN:rlw]
Gene
RlegWSM1455_01930  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RlegWSM1455_19360  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
RlegWSM1455_21285  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
RlegWSM1455_21635  malate synthase G [KO:K01638] [EC:2.3.3.9]
RlegWSM1455_20050  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RlegWSM1455_08945  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RlegWSM1455_10270  citrate synthase [KO:K01647] [EC:2.3.3.1]
RlegWSM1455_10275  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
RlegWSM1455_20365  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RlegWSM1455_20830  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RlegWSM1455_25645  thiolase family protein [KO:K00626] [EC:2.3.1.9]
RlegWSM1455_33295  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RlegWSM1455_01125  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RlegWSM1455_20825  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
RlegWSM1455_06870  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RlegWSM1455_10515  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
RlegWSM1455_10545  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RlegWSM1455_32830  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RlegWSM1455_02305  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
RlegWSM1455_02310  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
RlegWSM1455_02315  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
RlegWSM1455_08230  catalase [KO:K03781] [EC:1.11.1.6]
RlegWSM1455_22385  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
RlegWSM1455_22595  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RlegWSM1455_28445  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RlegWSM1455_02505  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
RlegWSM1455_10560  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
RlegWSM1455_11230  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RlegWSM1455_14570  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
RlegWSM1455_15620  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
RlegWSM1455_01890  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
RlegWSM1455_05560  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
RlegWSM1455_09645  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RlegWSM1455_31290  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
RlegWSM1455_06385  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RlegWSM1455_10600  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
RlegWSM1455_31215  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
RlegWSM1455_31280  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
RlegWSM1455_10590  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
RlegWSM1455_20005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RlegWSM1455_33320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RlegWSM1455_09005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RlegWSM1455_10595  gcvH; glycine cleavage system protein GcvH [KO:K02437]
RlegWSM1455_16970  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
RlegWSM1455_17005  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
RlegWSM1455_24395  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
RlegWSM1455_16865  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
RlegWSM1455_17010  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RlegWSM1455_33885  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
RlegWSM1455_11605  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
RlegWSM1455_31625  glycerate kinase [KO:K00865] [EC:2.7.1.165]
RlegWSM1455_08175  glycerate kinase [KO:K11529] [EC:2.7.1.165]
RlegWSM1455_28430  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RlegWSM1455_18675  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RlegWSM1455_19810  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
RlegWSM1455_19820  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
RlegWSM1455_19825  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
RlegWSM1455_19830  formate dehydrogenase subunit gamma [KO:K00127]
RlegWSM1455_22820  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RlegWSM1455_31285  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RlegWSM1455_33675  formamidase [KO:K01455] [EC:3.5.1.49]
RlegWSM1455_29790  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rlw00010  Glycolysis / Gluconeogenesis
rlw00020  Citrate cycle (TCA cycle)
rlw00030  Pentose phosphate pathway
rlw00053  Ascorbate and aldarate metabolism
rlw00071  Fatty acid degradation
rlw00230  Purine metabolism
rlw00250  Alanine, aspartate and glutamate metabolism
rlw00260  Glycine, serine and threonine metabolism
rlw00620  Pyruvate metabolism
rlw00710  Carbon fixation by Calvin cycle
rlw00750  Vitamin B6 metabolism
rlw00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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