KEGG   PATHWAY: rlw00030
Entry
rlw00030                    Pathway                                
Name
Pentose phosphate pathway - Rhizobium laguerreae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlw00030  Pentose phosphate pathway
rlw00030

Module
rlw_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:rlw00030]
rlw_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rlw00030]
rlw_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:rlw00030]
rlw_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:rlw00030]
rlw_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:rlw00030]
rlw_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:rlw00030]
Other DBs
GO: 0006098
Organism
Rhizobium laguerreae [GN:rlw]
Gene
RlegWSM1455_00695  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
RlegWSM1455_01880  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
RlegWSM1455_04810  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
RlegWSM1455_01875  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
RlegWSM1455_17840  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RlegWSM1455_11815  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
RlegWSM1455_24085  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
RlegWSM1455_10745  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
RlegWSM1455_17885  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
RlegWSM1455_11330  transketolase family protein [KO:K00615] [EC:2.2.1.1]
RlegWSM1455_11335  transketolase [KO:K00615] [EC:2.2.1.1]
RlegWSM1455_18850  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
RlegWSM1455_11225  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
RlegWSM1455_17570  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
RlegWSM1455_22665  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
RlegWSM1455_11465  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
RlegWSM1455_32445  ribokinase [KO:K00852] [EC:2.7.1.15]
RlegWSM1455_00280  ribokinase [KO:K00852] [EC:2.7.1.15]
RlegWSM1455_11480  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
RlegWSM1455_22690  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
RlegWSM1455_18455  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
RlegWSM1455_22470  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
RlegWSM1455_15200  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
RlegWSM1455_01870  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
RlegWSM1455_18675  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RlegWSM1455_04965  glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
RlegWSM1455_19040  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
RlegWSM1455_25110  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
RlegWSM1455_33855  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
RlegWSM1455_29640  gluconokinase [KO:K00851] [EC:2.7.1.12]
RlegWSM1455_33880  gluconokinase [KO:K00851] [EC:2.7.1.12]
RlegWSM1455_02060  gluconokinase [KO:K00851] [EC:2.7.1.12]
RlegWSM1455_15610  sugar kinase [KO:K00874] [EC:2.7.1.45]
RlegWSM1455_08175  glycerate kinase [KO:K11529] [EC:2.7.1.165]
RlegWSM1455_17915  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
RlegWSM1455_24055  class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
RlegWSM1455_24460  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
RlegWSM1455_14450  pyrophosphate--fructose-6-phosphate 1-phosphotransferase [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
rlw00010  Glycolysis / Gluconeogenesis
rlw00040  Pentose and glucuronate interconversions
rlw00052  Galactose metabolism
rlw00230  Purine metabolism
rlw00240  Pyrimidine metabolism
rlw00340  Histidine metabolism
rlw00630  Glyoxylate and dicarboxylate metabolism
rlw00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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