KEGG   PATHWAY: rmuc00260
Entry
rmuc00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Roseomonas mucosa
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
rmuc00260  Glycine, serine and threonine metabolism
rmuc00260

Module
rmuc_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rmuc00260]
rmuc_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:rmuc00260]
rmuc_M00621  Glycine cleavage system [PATH:rmuc00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Roseomonas mucosa [GN:rmuc]
Gene
FOB66_09525  aspartate kinase [KO:K00928] [EC:2.7.2.4]
FOB66_04430  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
FOB66_07165  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
FOB66_09005  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
FOB66_16535  homoserine kinase [KO:K02204] [EC:2.7.1.39]
FOB66_13695  pyridoxal-phosphate dependent enzyme [KO:K01733] [EC:4.2.3.1]
FOB66_03560  threonine synthase [KO:K01733] [EC:4.2.3.1]
FOB66_10260  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K01620] [EC:4.1.2.48]
FOB66_10395  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FOB66_09030  D-2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FOB66_11905  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FOB66_05925  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FOB66_08205  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FOB66_15775  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
FOB66_17485  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
FOB66_02275  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
FOB66_02005  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
FOB66_04020  3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
FOB66_20585  hydroxyacid dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
FOB66_14460  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
FOB66_12545  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
FOB66_07195  serB; phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
FOB66_14290  ydfG; bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
FOB66_16120  hemA; 5-aminolevulinate synthase [KO:K00643] [EC:2.3.1.37]
FOB66_16475  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FOB66_16485  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FOB66_04535  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB66_10225  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB66_16480  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FOB66_06270  phosphatidylcholine/phosphatidylserine synthase [KO:K17103] [EC:2.7.8.8]
FOB66_02870  solA; N-methyl-L-tryptophan oxidase [KO:K00301] [EC:1.5.3.1]
FOB66_21460  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
FOB66_15265  threonine ammonia-lyase [KO:K01754] [EC:4.3.1.19]
FOB66_03700  tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
FOB66_03705  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
rmuc00010  Glycolysis / Gluconeogenesis
rmuc00020  Citrate cycle (TCA cycle)
rmuc00230  Purine metabolism
rmuc00250  Alanine, aspartate and glutamate metabolism
rmuc00270  Cysteine and methionine metabolism
rmuc00290  Valine, leucine and isoleucine biosynthesis
rmuc00300  Lysine biosynthesis
rmuc00330  Arginine and proline metabolism
rmuc00460  Cyanoamino acid metabolism
rmuc00470  D-Amino acid metabolism
rmuc00564  Glycerophospholipid metabolism
rmuc00600  Sphingolipid metabolism
rmuc00620  Pyruvate metabolism
rmuc00630  Glyoxylate and dicarboxylate metabolism
rmuc00640  Propanoate metabolism
rmuc00680  Methane metabolism
rmuc00860  Porphyrin metabolism
rmuc00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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