KEGG   PATHWAY: ron00630
Entry
ron00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Raoultella ornithinolytica S12
Class
Metabolism; Carbohydrate metabolism
Pathway map
ron00630  Glyoxylate and dicarboxylate metabolism
ron00630

Module
ron_M00012  Glyoxylate cycle [PATH:ron00630]
ron_M00621  Glycine cleavage system [PATH:ron00630]
Other DBs
GO: 0046487 0043648
Organism
Raoultella ornithinolytica S12 [GN:ron]
Gene
TE10_03585  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
TE10_03995  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
TE10_03580  malate synthase [KO:K01638] [EC:2.3.3.9]
TE10_25170  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TE10_14250  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
TE10_09455  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
TE10_12540  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TE10_13750  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
TE10_06370  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
TE10_16900  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TE10_23040  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TE10_10760  catalase [KO:K03781] [EC:1.11.1.6]
TE10_12305  katE; hydroperoxidase [KO:K03781] [EC:1.11.1.6]
TE10_11185  ghrA; bifunctional glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
TE10_21720  2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
TE10_01210  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
TE10_00380  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
TE10_02520  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
TE10_21235  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
TE10_23595  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
TE10_23605  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
TE10_14415  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TE10_06350  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
TE10_23600  glycine cleavage system protein H [KO:K02437]
TE10_24665  garR; tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
TE10_22595  glycerate kinase [KO:K00865] [EC:2.7.1.165]
TE10_24660  glycerate kinase [KO:K00865] [EC:2.7.1.165]
TE10_15275  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
TE10_13140  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
TE10_22715  1,2-propanediol oxidoreductase [KO:K00048] [EC:1.1.1.77]
TE10_10990  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
TE10_15280  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
TE10_18340  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
TE10_02570  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
TE10_02575  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
TE10_02565  formate dehydrogenase [KO:K00124]
TE10_02560  formate dehydrogenase [KO:K00127]
TE10_17510  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ron00010  Glycolysis / Gluconeogenesis
ron00020  Citrate cycle (TCA cycle)
ron00030  Pentose phosphate pathway
ron00053  Ascorbate and aldarate metabolism
ron00071  Fatty acid degradation
ron00230  Purine metabolism
ron00250  Alanine, aspartate and glutamate metabolism
ron00260  Glycine, serine and threonine metabolism
ron00620  Pyruvate metabolism
ron00710  Carbon fixation by Calvin cycle
ron00750  Vitamin B6 metabolism
ron00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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