KEGG   PATHWAY: rpa00630
Entry
rpa00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodopseudomonas palustris CGA009
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpa00630  Glyoxylate and dicarboxylate metabolism
rpa00630

Module
rpa_M00012  Glyoxylate cycle [PATH:rpa00630]
rpa_M00621  Glycine cleavage system [PATH:rpa00630]
rpa_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rpa00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodopseudomonas palustris CGA009 [GN:rpa]
Gene
TX73_022775  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
TX73_001095  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
TX73_011905  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
TX73_017830  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
TX73_021855  malate synthase G [KO:K01638] [EC:2.3.3.9]
TX73_000995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TX73_015065  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
TX73_001045  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
TX73_002750  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_004215  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_008765  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_009030  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_011915  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_016520  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
TX73_017940  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_019245  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_022530  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
TX73_002755  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
TX73_015205  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
TX73_016420  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
TX73_016565  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
TX73_009435  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
TX73_009445  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
TX73_005805  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
TX73_005810  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
TX73_005815  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
TX73_017115  catalase [KO:K03781] [EC:1.11.1.6]
TX73_002195  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
TX73_010205  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
TX73_001365  RuBisCO large subunit C-terminal-like domain-containing protein [KO:K01601] [EC:4.1.1.39]
TX73_008010  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
TX73_024100  ribulose-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
TX73_008015  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
TX73_004070  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
TX73_005065  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
TX73_007190  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
TX73_015390  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
TX73_021820  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
TX73_014115  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
TX73_014480  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
TX73_019935  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
TX73_019925  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
TX73_000960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TX73_014835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TX73_019930  gcvH; glycine cleavage system protein GcvH [KO:K02437]
TX73_009245  glycerate kinase [KO:K11529] [EC:2.7.1.165]
TX73_008960  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
TX73_003805  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
TX73_003795  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
TX73_003790  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
TX73_003785  formate dehydrogenase subunit gamma [KO:K00127]
TX73_020890  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
TX73_006445  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
TX73_009910  formamidase [KO:K01455] [EC:3.5.1.49]
TX73_010025  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpa00010  Glycolysis / Gluconeogenesis
rpa00020  Citrate cycle (TCA cycle)
rpa00030  Pentose phosphate pathway
rpa00053  Ascorbate and aldarate metabolism
rpa00071  Fatty acid degradation
rpa00230  Purine metabolism
rpa00250  Alanine, aspartate and glutamate metabolism
rpa00260  Glycine, serine and threonine metabolism
rpa00620  Pyruvate metabolism
rpa00710  Carbon fixation by Calvin cycle
rpa00750  Vitamin B6 metabolism
rpa00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system