KEGG   PATHWAY: rpa00020
Entry
rpa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodopseudomonas palustris CGA009
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpa00020  Citrate cycle (TCA cycle)
rpa00020

Module
rpa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rpa00020]
rpa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rpa00020]
rpa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rpa00020]
rpa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rpa00020]
rpa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rpa00020]
Other DBs
GO: 0006099
Organism
Rhodopseudomonas palustris CGA009 [GN:rpa]
Gene
TX73_015065  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
TX73_001045  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
TX73_019855  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TX73_000980  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
TX73_000975  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
TX73_000960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TX73_014835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TX73_006295  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TX73_006300  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TX73_006305  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
TX73_000985  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
TX73_000990  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
TX73_002780  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
TX73_001125  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
TX73_001120  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TX73_001135  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
TX73_001130  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
TX73_020085  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
TX73_006820  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
TX73_018130  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
TX73_000995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TX73_006835  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
TX73_001865  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
TX73_014855  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
TX73_014850  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
TX73_014840  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
TX73_024525  2-oxoacid:acceptor oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rpa00010  Glycolysis / Gluconeogenesis
rpa00053  Ascorbate and aldarate metabolism
rpa00061  Fatty acid biosynthesis
rpa00071  Fatty acid degradation
rpa00190  Oxidative phosphorylation
rpa00220  Arginine biosynthesis
rpa00250  Alanine, aspartate and glutamate metabolism
rpa00280  Valine, leucine and isoleucine degradation
rpa00350  Tyrosine metabolism
rpa00470  D-Amino acid metabolism
rpa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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