KEGG PATHWAY: rpm00260

PATHWAY: rpm00260

Entry

rpm00260                    Pathway

Name

Glycine, serine and threonine metabolism - Pararhodospirillum photometricum

Description

Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].

Class

Metabolism; Amino acid metabolism

Pathway map

rpm00260

Glycine, serine and threonine metabolism

Module

rpm_M00018

Threonine biosynthesis, aspartate => homoserine => threonine [PATH:rpm00260]

rpm_M00020

Serine biosynthesis, glycerate-3P => serine [PATH:rpm00260]

rpm_M00338

Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:rpm00260]

rpm_M00621

Glycine cleavage system [PATH:rpm00260]

Other DBs

GO:	0006544 0006563 0070178 0006566

Organism

Pararhodospirillum photometricum [GN:rpm]

Gene

RSPPHO_00219

Aspartokinase [KO:K00928] [EC:2.7.2.4]

RSPPHO_02717

Aspartate semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]

RSPPHO_01286

Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]

RSPPHO_02684

thrB; Homoserine kinase [KO:K02204] [EC:2.7.1.39]

RSPPHO_00738

L-threonine synthase [KO:K01733] [EC:4.2.3.1]

RSPPHO_02038

glyA2; Serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]

RSPPHO_01014

Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]

RSPPHO_02063

Phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]

RSPPHO_02023

serA; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]

RSPPHO_00633

D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]

RSPPHO_02022

Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]

RSPPHO_03179

Phosphoserine phosphatase [KO:K01079] [EC:3.1.3.3]

RSPPHO_00402

5-aminolevulinate synthase [KO:K00643] [EC:2.3.1.37]

RSPPHO_02416

gcvPA; Probable glycine dehydrogenase [decarboxylating] subunit 1 [KO:K00282] [EC:1.4.4.2]

RSPPHO_02415

Glycine dehydrogenase (Decarboxylating) beta subunit [KO:K00283] [EC:1.4.4.2]

RSPPHO_02418

Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]

RSPPHO_02123

Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]

RSPPHO_02150

Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]

RSPPHO_02417

gcvH; Glycine cleavage system H protein [KO:K02437]

RSPPHO_00332

CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]

RSPPHO_02304

Aminomethyltransferase [KO:K00302] [EC:1.5.3.24 1.5.3.1]

RSPPHO_02336

FAD dependent oxidoreductase [KO:K00303] [EC:1.5.3.24 1.5.3.1]

RSPPHO_02303

Putative sarcosine oxidase gamma subunit protein (SoxG) [KO:K00305] [EC:1.5.3.24 1.5.3.1]

RSPPHO_02305

Sarcosine oxidase, delta subunit [KO:K00304] [EC:1.5.3.24 1.5.3.1]

RSPPHO_02829

Cysteine synthase [KO:K01697] [EC:4.2.1.22]

RSPPHO_02828

Cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]

RSPPHO_02672

Tryptophan synthase alpha chain [KO:K01695] [EC:4.2.1.20]

RSPPHO_02671

Tryptophan synthase, beta chain [KO:K01696] [EC:4.2.1.20]

RSPPHO_01933

Tryptophan synthase beta chain 2 [KO:K06001] [EC:4.2.1.20]

Compound

C00011

CO2

C00014

Ammonia

C00022

Pyruvate

C00037

Glycine

C00048

Glyoxylate

C00049

L-Aspartate

C00065

L-Serine

C00078

L-Tryptophan

C00097

L-Cysteine

C00101

Tetrahydrofolate

C00109

2-Oxobutanoate

C00114

Choline

C00143

5,10-Methylenetetrahydrofolate

C00168

Hydroxypyruvate

C00188

L-Threonine

C00197

3-Phospho-D-glycerate

C00213

Sarcosine

C00258

D-Glycerate

C00263

L-Homoserine

C00300

Creatine

C00430

5-Aminolevulinate

C00441

L-Aspartate 4-semialdehyde

C00546

Methylglyoxal

C00576

Betaine aldehyde

C00581

Guanidinoacetate

C00631

2-Phospho-D-glycerate

C00719

Betaine

C00740

D-Serine

C00986

1,3-Diaminopropane

C01005

O-Phospho-L-serine

C01026

N,N-Dimethylglycine

C01102

O-Phospho-L-homoserine

C01242

[Protein]-S8-aminomethyldihydrolipoyllysine

C01888

Aminoacetone

C02051

Lipoylprotein

C02291

L-Cystathionine

C02737

Phosphatidylserine

C02972

Dihydrolipoylprotein

C03082

4-Phospho-L-aspartate

C03194

(R)-1-Aminopropan-2-ol

C03232

3-Phosphonooxypyruvate

C03283

L-2,4-Diaminobutanoate

C03508

L-2-Amino-3-oxobutanoic acid

C05519

L-Allothreonine

C06231

Ectoine

C06442

N(gamma)-Acetyldiaminobutyrate

C16432

5-Hydroxyectoine

C19929

N(alpha)-Acetyl-L-2,4-diaminobutyrate

Reference

Authors

Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).

Title

[Cellular Functions and Metabolic Maps] (In Japanese)

Journal

Tokyo Kagaku Dojin (1997)

Reference

PMID:11823218

Authors

Kuhlmann AU, Bremer E.

Title

Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.

Journal

Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002

Reference

PMID:10473374

Authors

Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.

Title

Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.

Journal

Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999

Reference

PMID:17636255

Authors

Bursy J, Pierik AJ, Pica N, Bremer E.

Title

Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.

Journal

J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200

Reference

PMID:16707670

Authors

Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.

Title

The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.

Journal

J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06

Reference

PMID:15470257

Authors

Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J

Title

FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.

Journal

Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004

Reference

PMID:7639721