KEGG   PATHWAY: rrho00020
Entry
rrho00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium rhododendri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rrho00020  Citrate cycle (TCA cycle)
rrho00020

Module
rrho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rrho00020]
rrho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rrho00020]
rrho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rrho00020]
rrho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rrho00020]
Other DBs
GO: 0006099
Organism
Rhizobium rhododendri [GN:rrho]
Gene
PR018_06105  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PR018_06560  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
PR018_06565  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
PR018_14625  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PR018_07435  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PR018_14350  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PR018_14345  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PR018_06160  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PR018_14325  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PR018_14355  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PR018_14365  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PR018_26920  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
PR018_14390  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PR018_14385  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PR018_14400  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PR018_14395  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PR018_07715  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PR018_14370  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PR018_15090  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PR018_15800  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PR018_06140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PR018_06145  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PR018_06150  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PR018_27170  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rrho00010  Glycolysis / Gluconeogenesis
rrho00053  Ascorbate and aldarate metabolism
rrho00061  Fatty acid biosynthesis
rrho00071  Fatty acid degradation
rrho00190  Oxidative phosphorylation
rrho00220  Arginine biosynthesis
rrho00250  Alanine, aspartate and glutamate metabolism
rrho00280  Valine, leucine and isoleucine degradation
rrho00350  Tyrosine metabolism
rrho00470  D-Amino acid metabolism
rrho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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