KEGG   PATHWAY: rrt00020
Entry
rrt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodococcus rhodochrous
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rrt00020  Citrate cycle (TCA cycle)
rrt00020

Module
rrt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rrt00020]
rrt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rrt00020]
rrt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rrt00020]
rrt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rrt00020]
rrt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rrt00020]
rrt_M00982  Methylcitrate cycle [PATH:rrt00020]
Other DBs
GO: 0006099
Organism
Rhodococcus rhodochrous [GN:rrt]
Gene
4535765_00932  citA; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
4535765_00939  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
4535765_01038  sucC; succinyl-CoA synthetase beta subunit/malate thiokinase [KO:K01903] [EC:6.2.1.5]
4535765_01039  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
4535765_01183  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
4535765_01303  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
4535765_01383  sucA; 2-oxoglutarate dehydrogenase suca [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
4535765_01499  acnA3_1; aconitate hydratase [KO:K27802]
4535765_01877  scpC; acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
4535765_01886  pca; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
4535765_01952  mqo_1; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
4535765_02245  acnA; aconitate hydratase [KO:K27802]
4535765_02379  mqo_2; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
4535765_02396  icd_1; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
4535765_03026  pdhC_2; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
4535765_03060  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
4535765_03420  sdhC; probable succinate dehydrogenase cytochrome b subunit [KO:K00241]
4535765_03421  sdhD2; succinate dehydrogenase membrane subunit sdhd2 [KO:K00242]
4535765_03422  sdhA2; succinate dehydrogenase flavoprotein subunit sdha2 [KO:K00239] [EC:1.3.5.1]
4535765_03423  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
4535765_03430  acnA3_2; aconitate hydratase [KO:K27802]
4535765_03432  icd_2; nADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
4535765_03787  lpd; dihydrolipoamide dehydrogenase/branched-chain alpha-ketoacid dehydrogenase [KO:K00382] [EC:1.8.1.4]
4535765_03917  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
4535765_04222  pckA; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
4535765_04271  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
4535765_04272  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rrt00010  Glycolysis / Gluconeogenesis
rrt00053  Ascorbate and aldarate metabolism
rrt00061  Fatty acid biosynthesis
rrt00071  Fatty acid degradation
rrt00190  Oxidative phosphorylation
rrt00220  Arginine biosynthesis
rrt00250  Alanine, aspartate and glutamate metabolism
rrt00280  Valine, leucine and isoleucine degradation
rrt00350  Tyrosine metabolism
rrt00470  D-Amino acid metabolism
rrt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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