KEGG   PATHWAY: same00020
Entry
same00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sinorhizobium americanum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
same00020  Citrate cycle (TCA cycle)
same00020

Module
same_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:same00020]
same_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:same00020]
same_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:same00020]
same_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:same00020]
same_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:same00020]
Other DBs
GO: 0006099
Organism
Sinorhizobium americanum [GN:same]
Gene
SAMCFNEI73_Ch0046  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SAMCFNEI73_Ch1574  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SAMCFNEI73_Ch1575  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SAMCFNEI73_Ch1576  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SAMCFNEI73_Ch1579  lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
SAMCFNEI73_Ch1640  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
SAMCFNEI73_Ch2021  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SAMCFNEI73_Ch2084  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SAMCFNEI73_Ch3365  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAMCFNEI73_Ch3492  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAMCFNEI73_Ch3496  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAMCFNEI73_Ch3497  sucA; 2-oxoglutarate dehydrogenase E1 componentSucA [KO:K00164] [EC:1.2.4.2]
SAMCFNEI73_Ch3498  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SAMCFNEI73_Ch3499  sucC; succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SAMCFNEI73_Ch3500  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SAMCFNEI73_Ch3504  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
SAMCFNEI73_Ch3505  sdhA; succinate dehydrogenase flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
SAMCFNEI73_Ch3506  [KO:K00242]
SAMCFNEI73_Ch3507  [KO:K00241]
SAMCFNEI73_Ch3609  acnA; aconitate hydratase AcnA [KO:K27802]
SAMCFNEI73_Ch3661  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
SAMCFNEI73_pA0087  [KO:K00163] [EC:1.2.4.1]
SAMCFNEI73_pB0457  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
SAMCFNEI73_pC0542  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SAMCFNEI73_pC0735  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAMCFNEI73_pC1592  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
SAMCFNEI73_pC1605  [KO:K00627] [EC:2.3.1.12]
SAMCFNEI73_pC1613  lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
SAMCFNEI73_pC1614  acoC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SAMCFNEI73_pC1870  acnA; aconitate hydratase AcnA [KO:K27802]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
same00010  Glycolysis / Gluconeogenesis
same00053  Ascorbate and aldarate metabolism
same00061  Fatty acid biosynthesis
same00071  Fatty acid degradation
same00190  Oxidative phosphorylation
same00220  Arginine biosynthesis
same00250  Alanine, aspartate and glutamate metabolism
same00280  Valine, leucine and isoleucine degradation
same00350  Tyrosine metabolism
same00470  D-Amino acid metabolism
same00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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