KEGG   PATHWAY: sauy00020
Entry
sauy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus aureus subsp. aureus ST228/18583 (MRSA)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sauy00020  Citrate cycle (TCA cycle)
sauy00020

Module
sauy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sauy00020]
sauy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sauy00020]
sauy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sauy00020]
sauy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sauy00020]
sauy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sauy00020]
Other DBs
GO: 0006099
Organism
Staphylococcus aureus subsp. aureus ST228/18583 (MRSA) [GN:sauy]
Gene
SAI8T7_1007770  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SAI8T7_1007780  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SAI8T7_1007790  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SAI8T7_1007800  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAI8T7_1007930  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SAI8T7_1008170  sdhC; Succinate dehydrogenase cytochrome b-558 [KO:K00241]
SAI8T7_1008180  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAI8T7_1008190  sdhB; Succinate dehydrogenase iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
SAI8T7_1008890  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SAI8T7_1008900  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SAI8T7_1009280  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAI8T7_1009290  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAI8T7_1009700  acnA; Aconitate hydratase [KO:K27802]
SAI8T7_1010210  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SAI8T7_1010220  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SAI8T7_1011050  [KO:K00382] [EC:1.8.1.4]
SAI8T7_1012350  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
SAI8T7_1012360  citZ; Citrate synthase II [KO:K01659] [EC:2.3.3.5]
SAI8T7_1013130  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SAI8T7_1013700  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SAI8T7_1017510  mqo1; Probable malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
SAI8T7_1019450  mqo; Probable malate:quinone oxidoreductase 2 [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sauy00010  Glycolysis / Gluconeogenesis
sauy00053  Ascorbate and aldarate metabolism
sauy00061  Fatty acid biosynthesis
sauy00071  Fatty acid degradation
sauy00190  Oxidative phosphorylation
sauy00220  Arginine biosynthesis
sauy00250  Alanine, aspartate and glutamate metabolism
sauy00280  Valine, leucine and isoleucine degradation
sauy00350  Tyrosine metabolism
sauy00470  D-Amino acid metabolism
sauy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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