KEGG   PATHWAY: scb00020
Entry
scb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces scabiei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
scb00020  Citrate cycle (TCA cycle)
scb00020

Module
scb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scb00020]
scb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:scb00020]
scb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scb00020]
scb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scb00020]
scb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scb00020]
Other DBs
GO: 0006099
Organism
Streptomyces scabiei [GN:scb]
Gene
SCAB_51341  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
SCAB_58791  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SCAB_21101  sacA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SCAB_12211  idh; NADP(+)-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SCAB_29781  putative 2-oxoglutarate dehydrogenase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SCAB_67061  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SCAB_37561  putative oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SCAB_63061  putative thiamine-pyrophosphate-binding oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SCAB_37571  putative oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SCAB_63051  putative thiamine-pyrophosphate-binding oxidoreductase subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SCAB_16571  succinyl-coa synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SCAB_35791  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
SCAB_16581  succinyl-coa synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SCAB_35801  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SCAB_11471  putative reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCAB_35291  dhsA; putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCAB_31601  putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SCAB_11461  putative reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SCAB_35301  dhsB; putative succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCAB_31611  putative succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SCAB_11481  putative cytochrome B subunit [KO:K00241]
SCAB_35271  putative succinate dehydrogenase membrane subunit [KO:K00241]
SCAB_35281  putative succinate dehydrogenase membrane subunit [KO:K00242]
SCAB_33551  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SCAB_33571  fumC; fumarate hydratase C [KO:K01679] [EC:4.2.1.2]
SCAB_35681  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SCAB_81861  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SCAB_34111  putative phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SCAB_67031  putative oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00163] [EC:1.2.4.1]
SCAB_64301  conserved hypothetical protein [KO:K00163] [EC:1.2.4.1]
SCAB_67051  putative dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
scb00010  Glycolysis / Gluconeogenesis
scb00053  Ascorbate and aldarate metabolism
scb00061  Fatty acid biosynthesis
scb00071  Fatty acid degradation
scb00190  Oxidative phosphorylation
scb00220  Arginine biosynthesis
scb00250  Alanine, aspartate and glutamate metabolism
scb00280  Valine, leucine and isoleucine degradation
scb00350  Tyrosine metabolism
scb00470  D-Amino acid metabolism
scb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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