KEGG   PATHWAY: seh00020
Entry
seh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Heidelberg SL476
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seh00020  Citrate cycle (TCA cycle)
seh00020

Module
seh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:seh00020]
seh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:seh00020]
seh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:seh00020]
seh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:seh00020]
seh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:seh00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Heidelberg SL476 [GN:seh]
Gene
SeHA_C0854  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
SeHA_C1899  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SeHA_C0173  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SeHA_C1355  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SeHA_C0859  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
SeHA_C0860  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
SeHA_C0168  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SeHA_C0862  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SeHA_C0861  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
SeHA_C0857  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SeHA_C0858  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SeHA_C0855  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SeHA_C0856  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SeHA_C4761  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SeHA_C4760  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
SeHA_C4759  frdC; fumarate reductase, cytochrome b subunit [KO:K00246]
SeHA_C4758  fumarate reductase subunit D [KO:K00247]
SeHA_C1636  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SeHA_C4646  fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SeHA_C0889  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
SeHA_C1637  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SeHA_C1522  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
SeHA_C3657  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
SeHA_C3807  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SeHA_C0166  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SeHA_C0167  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
SeHA_C1831  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
seh00010  Glycolysis / Gluconeogenesis
seh00053  Ascorbate and aldarate metabolism
seh00061  Fatty acid biosynthesis
seh00071  Fatty acid degradation
seh00190  Oxidative phosphorylation
seh00220  Arginine biosynthesis
seh00250  Alanine, aspartate and glutamate metabolism
seh00280  Valine, leucine and isoleucine degradation
seh00350  Tyrosine metabolism
seh00470  D-Amino acid metabolism
seh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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