KEGG   PATHWAY: seng00020
Entry
seng00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces endophytica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seng00020  Citrate cycle (TCA cycle)
seng00020

Module
seng_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:seng00020]
seng_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:seng00020]
Other DBs
GO: 0006099
Organism
Streptomyces endophytica [GN:seng]
Gene
OJ254_00235  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
OJ254_00240  citrate synthase [KO:K01647] [EC:2.3.3.1]
OJ254_05615  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
OJ254_14575  citrate synthase [KO:K01647] [EC:2.3.3.1]
OJ254_21450  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OJ254_03050  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
OJ254_17205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OJ254_11005  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OJ254_11000  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OJ254_05310  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OJ254_05315  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OJ254_03980  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OJ254_17880  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OJ254_03985  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OJ254_04980  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OJ254_17875  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OJ254_04965  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OJ254_17885  succinate dehydrogenase [KO:K00241]
OJ254_04970  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
OJ254_04110  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
OJ254_05240  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OJ254_04360  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OJ254_16175  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OJ254_17200  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
seng00010  Glycolysis / Gluconeogenesis
seng00053  Ascorbate and aldarate metabolism
seng00061  Fatty acid biosynthesis
seng00071  Fatty acid degradation
seng00190  Oxidative phosphorylation
seng00220  Arginine biosynthesis
seng00250  Alanine, aspartate and glutamate metabolism
seng00280  Valine, leucine and isoleucine degradation
seng00350  Tyrosine metabolism
seng00470  D-Amino acid metabolism
seng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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