KEGG   PATHWAY: senn00020
Entry
senn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
senn00020  Citrate cycle (TCA cycle)
senn00020

Module
senn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:senn00020]
senn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:senn00020]
senn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:senn00020]
senn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:senn00020]
senn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:senn00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1 [GN:senn]
Gene
SN31241_17300  Citrate synthase I [KO:K01647] [EC:2.3.3.1]
SN31241_27940  Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
SN31241_11450  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SN31241_23060  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SN31241_17350  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SN31241_17360  Dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SN31241_11400  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SN31241_17380  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SN31241_17370  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SN31241_17330  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SN31241_17340  Succinate dehydrogenase, iron-sulfur [KO:K00240] [EC:1.3.5.1]
SN31241_17310  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
SN31241_17320  Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
SN31241_7320  reductase [KO:K00244] [EC:1.3.5.1]
SN31241_7310  reductase [KO:K00245] [EC:1.3.5.1]
SN31241_7300  reductase [KO:K00246]
SN31241_7290  reductase [KO:K00247]
SN31241_6190  Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SN31241_25360  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
SN31241_17610  Fumarate hydratase [KO:K01677] [EC:4.2.1.2]
SN31241_17600  Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region [KO:K01678] [EC:4.2.1.2]
SN31241_25370  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SN31241_24600  protein ydhZ [KO:K01675] [EC:4.2.1.2]
SN31241_41930  protein yggD [KO:K01774] [EC:4.2.1.2]
SN31241_44830  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SN31241_3870  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SN31241_11380  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SN31241_11390  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SN31241_27280  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
senn00010  Glycolysis / Gluconeogenesis
senn00053  Ascorbate and aldarate metabolism
senn00061  Fatty acid biosynthesis
senn00071  Fatty acid degradation
senn00190  Oxidative phosphorylation
senn00220  Arginine biosynthesis
senn00250  Alanine, aspartate and glutamate metabolism
senn00280  Valine, leucine and isoleucine degradation
senn00350  Tyrosine metabolism
senn00470  D-Amino acid metabolism
senn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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