KEGG   PATHWAY: setc00020
Entry
setc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
setc00020  Citrate cycle (TCA cycle)
setc00020

Module
setc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:setc00020]
setc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:setc00020]
setc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:setc00020]
setc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:setc00020]
setc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:setc00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921 [GN:setc]
Gene
CFSAN001921_13380  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CFSAN001921_08530  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CFSAN001921_16620  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CFSAN001921_10980  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CFSAN001921_13355  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
CFSAN001921_13350  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CFSAN001921_16645  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFSAN001921_13340  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CFSAN001921_13345  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CFSAN001921_13365  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFSAN001921_13360  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFSAN001921_13375  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
CFSAN001921_13370  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
CFSAN001921_18700  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CFSAN001921_18705  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CFSAN001921_18710  fumarate reductase subunit C [KO:K00246]
CFSAN001921_18715  fumarate reductase subunit D [KO:K00247]
CFSAN001921_18905  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CFSAN001921_09800  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CFSAN001921_13215  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CFSAN001921_13220  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
CFSAN001921_09795  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CFSAN001921_10210  hypothetical protein [KO:K01675] [EC:4.2.1.2]
CFSAN001921_00195  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFSAN001921_22945  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CFSAN001921_16655  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
CFSAN001921_16650  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CFSAN001921_08850  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
setc00010  Glycolysis / Gluconeogenesis
setc00053  Ascorbate and aldarate metabolism
setc00061  Fatty acid biosynthesis
setc00071  Fatty acid degradation
setc00190  Oxidative phosphorylation
setc00220  Arginine biosynthesis
setc00250  Alanine, aspartate and glutamate metabolism
setc00280  Valine, leucine and isoleucine degradation
setc00350  Tyrosine metabolism
setc00470  D-Amino acid metabolism
setc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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