KEGG   PATHWAY: sfe00020
Entry
sfe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Shigella flexneri 2002017 (serotype Fxv)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfe00020  Citrate cycle (TCA cycle)
sfe00020

Module
sfe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfe00020]
sfe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfe00020]
sfe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfe00020]
sfe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfe00020]
sfe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfe00020]
Other DBs
GO: 0006099
Organism
Shigella flexneri 2002017 (serotype Fxv) [GN:sfe]
Gene
SFxv_0117  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SFxv_0118  aceF; Pyruvate dehydrogenase dihydrolipoyltransacetylase component [KO:K00627] [EC:2.3.1.12]
SFxv_0119  lpd; putative pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component,-like enzyme [KO:K00382] [EC:1.8.1.4]
SFxv_0121  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SFxv_0626  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SFxv_0627  sucC; Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SFxv_0628  sucB; 2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
SFxv_0629  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SFxv_0632  sdhB; Succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
SFxv_0633  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SFxv_0634  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
SFxv_0635  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SFxv_0636  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
SFxv_1316  icd; Isocitrate dehydrogenase(NADP) [KO:K00031] [EC:1.1.1.42]
SFxv_1451  acnA; Aconitate hydrase 1 [KO:K27802]
SFxv_1831  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SFxv_1832  fumA; fumarase A [KO:K01676] [EC:4.2.1.2]
SFxv_2038  ydbK; putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SFxv_3198  yggD; putative transcriptional regulator [KO:K01774]
SFxv_3587  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SFxv_3735  pck; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SFxv_4475  fumB; Fumarase B, fumarate hydratase Class I [KO:K01676] [EC:4.2.1.2]
SFxv_4698  frdD; Fumarate reductase subunit D [KO:K00247]
SFxv_4699  frdC; Fumarate reductase subunit C [KO:K00246]
SFxv_4700  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
SFxv_4701  frdA; Fumarate reductase, anaerobic, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfe00010  Glycolysis / Gluconeogenesis
sfe00053  Ascorbate and aldarate metabolism
sfe00061  Fatty acid biosynthesis
sfe00071  Fatty acid degradation
sfe00190  Oxidative phosphorylation
sfe00220  Arginine biosynthesis
sfe00250  Alanine, aspartate and glutamate metabolism
sfe00280  Valine, leucine and isoleucine degradation
sfe00350  Tyrosine metabolism
sfe00470  D-Amino acid metabolism
sfe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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