KEGG   PATHWAY: sfiy00020
Entry
sfiy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces finlayi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfiy00020  Citrate cycle (TCA cycle)
sfiy00020

Module
sfiy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfiy00020]
sfiy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfiy00020]
sfiy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfiy00020]
sfiy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfiy00020]
sfiy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfiy00020]
Other DBs
GO: 0006099
Organism
Streptomyces finlayi [GN:sfiy]
Gene
F0344_14820  citrate synthase [KO:K01647] [EC:2.3.3.1]
F0344_23660  citrate synthase [KO:K01647] [EC:2.3.3.1]
F0344_05645  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F0344_04025  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F0344_10440  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
F0344_27510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F0344_33110  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F0344_14230  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
F0344_14235  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
F0344_13380  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F0344_13385  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F0344_02085  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F0344_11515  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F0344_13210  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F0344_02080  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F0344_11520  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F0344_13215  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F0344_02090  succinate dehydrogenase [KO:K00241]
F0344_13200  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F0344_13205  succinate dehydrogenase [KO:K00242]
F0344_11815  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
F0344_11865  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
F0344_13325  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F0344_12250  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
F0344_26375  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
F0344_27495  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
F0344_04265  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
F0344_04270  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
F0344_04275  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
F0344_27505  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfiy00010  Glycolysis / Gluconeogenesis
sfiy00053  Ascorbate and aldarate metabolism
sfiy00061  Fatty acid biosynthesis
sfiy00071  Fatty acid degradation
sfiy00190  Oxidative phosphorylation
sfiy00220  Arginine biosynthesis
sfiy00250  Alanine, aspartate and glutamate metabolism
sfiy00280  Valine, leucine and isoleucine degradation
sfiy00350  Tyrosine metabolism
sfiy00470  D-Amino acid metabolism
sfiy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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